Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 4.7e-109 397.9 204 100.0
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 6.4e-106 387.5 207 97.6
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 2.8e-101 372.1 207 94.7
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 4.0e-100 368.2 189 98.9
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 1.9e-97 359.4 200 93.5
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 6.0e-96 354.4 186 96.8
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 2.2e-90 335.9 206 88.3
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 3.2e-89 332.0 198 85.9
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 6.2e-85 317.8 203 82.3
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.1e-84 317.0 203 81.3
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 1.1e-84 317.0 203 81.3
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 3.1e-84 315.5 195 82.6
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 4.0e-84 315.1 203 80.8
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 5.2e-84 314.7 203 80.8
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 8.9e-84 313.9 204 79.4
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 8.9e-84 313.9 182 86.8
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 1.5e-83 313.2 205 80.5
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 2.0e-83 312.8 204 79.4
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 2.9e-82 308.9 204 79.4
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 2.9e-82 308.9 198 79.8
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 3.7e-82 308.5 204 79.9
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 3.7e-82 308.5 204 80.4
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 4.9e-82 308.1 203 79.8
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 1.1e-81 307.0 205 78.0
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 1.9e-81 306.2 205 79.0
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 1.9e-81 306.2 205 80.0
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 2.4e-81 305.8 187 84.0
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 2.4e-81 305.8 200 78.5
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 3.2e-81 305.4 199 78.4
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 3.2e-81 305.4 199 78.4
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 4.1e-81 305.1 203 76.8
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 4.1e-81 305.1 197 79.7
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 4.1e-81 305.1 207 77.8
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 5.4e-81 304.7 189 82.0
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 5.4e-81 304.7 201 79.1
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 7.1e-81 304.3 203 76.8
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 9.2e-81 303.9 200 79.0
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 9.2e-81 303.9 196 80.6
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 1.2e-80 303.5 196 79.1
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 1.6e-80 303.1 187 82.9
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 3.5e-80 302.0 189 83.1
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 3.5e-80 302.0 203 78.3
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 4.6e-80 301.6 205 76.6
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 7.8e-80 300.8 204 77.5
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 1.0e-79 300.4 193 79.3
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 1.0e-79 300.4 184 81.0
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 1.3e-79 300.1 203 76.8
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 2.3e-79 299.3 203 76.8
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 2.3e-79 299.3 204 77.9
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.0e-79 298.9 199 76.9
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.0e-79 298.9 199 76.9
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.0e-79 298.9 199 76.9
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.0e-79 298.9 199 76.9
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 6.6e-79 297.7 200 80.0
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 6.6e-79 297.7 191 80.6
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 8.6e-79 297.4 194 76.3
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 8.6e-79 297.4 204 74.5
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 1.5e-78 296.6 199 76.4
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 1.5e-78 296.6 204 76.0
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 1.9e-78 296.2 185 81.1
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 1.9e-78 296.2 188 80.3
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 7.3e-78 294.3 188 79.8
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 7.3e-78 294.3 186 79.0
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 9.6e-78 293.9 200 75.0
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 1.2e-77 293.5 197 78.2
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 1.2e-77 293.5 204 75.5
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 4.7e-77 291.6 201 75.6
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 1.4e-76 290.0 200 75.5
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 2.4e-76 289.3 201 74.6
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 2.4e-76 289.3 204 73.0
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 4.0e-76 288.5 197 75.6
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 4.0e-76 288.5 202 72.8
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 6.8e-76 287.7 200 74.5
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 8.9e-76 287.3 203 73.9
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 8.9e-76 287.3 202 73.3
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 1.2e-75 287.0 198 75.8
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 2.0e-75 286.2 201 74.1
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 3.4e-75 285.4 221 70.6
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 5.8e-75 284.6 201 73.1
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 1.7e-74 283.1 194 74.7
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 2.2e-74 282.7 201 73.1
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 2.2e-74 282.7 201 72.6
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 2.2e-74 282.7 201 73.1
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 2.2e-74 282.7 201 73.1
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 2.2e-74 282.7 186 79.6
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 2.9e-74 282.3 202 72.8
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 2.9e-74 282.3 190 74.2
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.9e-74 281.6 220 69.1
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 1.4e-73 280.0 197 74.6
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 1.6e-72 276.6 229 67.2
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 7.8e-72 274.2 203 67.5
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 1.7e-71 273.1 203 70.9
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 2.3e-71 272.7 203 70.4
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 6.6e-71 271.2 157 84.7
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 8.7e-71 270.8 204 73.0
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 1.2e-67 260.4 239 59.4
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 4.4e-67 258.5 164 79.3
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 9.9e-67 257.3 315 50.8
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 5.4e-65 251.5 156 80.1
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 2.4e-60 236.1 186 67.7
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 4.0e-60 235.3 153 77.1
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 1.5e-54 216.9 132 84.1
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 5.3e-52 208.4 116 92.2
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 7.6e-51 204.5 133 75.9
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.4e-49 200.3 132 76.5
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 4.2e-49 198.7 118 83.9
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 6.0e-48 194.9 106 89.6
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 2.3e-47 193.0 151 65.6
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 6.7e-47 191.4 128 77.3
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 1.9e-46 189.9 128 74.2
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 2.4e-44 183.0 108 84.3
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 1.5e-38 163.7 186 53.8
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 5.7e-38 161.8 146 60.3
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 2.7e-32 142.9 175 43.4
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 3.6e-32 142.5 192 43.8
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 2.8e-29 132.9 91 72.5
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 4.2e-25 119.0 133 49.6
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 9.4e-25 117.9 138 44.9
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 1.1e-22 110.9 194 37.6
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 5.7e-22 108.6 198 40.4
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 2.2e-21 106.7 230 32.6
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 8.5e-10 68.2 150 31.3
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 1.2e-08 64.3 71 43.7
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 8.0e-08 61.6 55 56.4
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 1.0e-07 61.2 36 75.0
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.0e-06 57.0 48 62.5


User provided reference genes

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