Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.7e-186 655.2 338 100.0
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.5e-181 639.4 339 97.6
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.6e-178 629.4 339 95.9
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.8e-158 562.8 340 87.4
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 2.3e-153 545.8 331 86.1
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 2.9e-148 528.9 326 84.0
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.8e-145 519.6 324 84.0
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 5.0e-116 421.8 341 65.7
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.2e-114 417.2 343 63.8
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.7e-111 405.6 343 63.6
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 6.6e-108 394.8 341 60.7
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 4.0e-105 385.6 343 60.1
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 3.4e-104 382.5 344 61.0
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.9e-103 378.6 343 61.5
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.1e-101 373.2 345 60.3
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 3.5e-101 372.5 333 59.5
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 5.6e-99 365.2 343 56.9
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 2.6e-96 356.3 344 55.2
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 2.6e-96 356.3 344 56.1
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 7.6e-96 354.8 344 56.7
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 3.8e-95 352.4 343 56.6
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.9e-95 352.1 342 57.3
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 6.4e-95 351.7 343 56.6
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 2.4e-94 349.7 345 58.0
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 4.6e-93 345.5 345 56.2
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 5.1e-92 342.0 344 56.4
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 8.6e-92 341.3 343 55.7
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.9e-91 340.1 328 55.5
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 4.3e-91 339.0 344 54.7
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.2e-90 337.4 344 54.9
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.2e-90 337.4 343 53.4
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 6.2e-90 335.1 343 53.9
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 8.1e-90 334.7 347 54.2
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.8e-89 333.6 343 55.4
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.0e-89 332.4 344 52.9
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 8.9e-89 331.3 343 55.1
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 8.9e-89 331.3 344 53.2
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.2e-88 330.9 344 52.9
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 4.4e-88 328.9 354 53.4
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 9.9e-88 327.8 346 52.9
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 3.8e-87 325.9 355 53.5
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 4.9e-87 325.5 344 54.1
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.1e-86 324.3 336 53.3
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.4e-86 323.2 343 51.3
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 7.1e-86 321.6 341 52.2
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.5e-85 319.3 346 55.8
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.5e-85 319.3 343 53.9
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.0e-84 317.8 343 53.4
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.7e-84 317.0 341 51.3
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.3e-84 316.6 344 50.3
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 5.1e-84 315.5 346 51.7
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.7e-84 314.7 344 52.9
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 7.3e-83 311.6 281 58.0
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 7.3e-83 311.6 344 49.7
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 9.6e-83 311.2 341 51.9
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 3.6e-82 309.3 339 49.6
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 3.6e-82 309.3 339 49.6
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 1.8e-81 307.0 347 49.9
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 1.8e-81 307.0 346 53.5
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 6.9e-81 305.1 344 49.1
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 3.4e-80 302.8 344 50.0
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 7.6e-80 301.6 343 49.0
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 9.9e-80 301.2 346 48.8
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.7e-79 300.4 311 55.0
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 2.2e-79 300.1 343 49.0
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 6.4e-79 298.5 346 48.3
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 2.4e-78 296.6 338 49.7
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.2e-78 296.2 306 54.9
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 5.4e-78 295.4 338 49.4
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 5.4e-78 295.4 342 49.1
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 5.4e-78 295.4 345 51.0
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 9.3e-78 294.7 346 47.7
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.2e-77 294.3 346 47.4
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.2e-77 294.3 346 50.3
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 2.7e-77 293.1 345 51.6
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 3.5e-77 292.7 346 47.4
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 4.6e-77 292.4 345 47.8
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 6.0e-77 292.0 336 50.9
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 2.3e-76 290.0 344 46.8
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 5.1e-76 288.9 343 48.7
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 5.1e-76 288.9 344 49.1
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 6.7e-76 288.5 343 51.0
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 6.7e-76 288.5 347 49.6
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.1e-75 287.7 344 49.7
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.5e-75 287.3 344 49.4
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.5e-75 287.3 344 46.8
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 2.5e-75 286.6 338 48.2
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.6e-75 285.4 335 50.7
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 5.6e-75 285.4 345 50.7
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 7.4e-75 285.0 346 48.0
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 9.6e-75 284.6 306 53.3
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 1.6e-74 283.9 343 48.7
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.1e-74 283.5 343 47.8
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 3.7e-74 282.7 343 47.5
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 6.2e-74 282.0 343 47.8
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.1e-73 281.2 343 48.1
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 3.1e-73 279.6 343 47.8
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 6.9e-73 278.5 343 47.8
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.5e-72 277.3 346 46.8
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 2.6e-72 276.6 293 51.9
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.9e-71 273.1 322 49.1
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 3.8e-71 272.7 341 46.0
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.4e-70 270.8 307 50.5
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 5.5e-70 268.9 342 48.8
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 7.1e-70 268.5 318 50.6
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 7.1e-70 268.5 322 47.5
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 9.3e-70 268.1 318 49.7
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 7.9e-69 265.0 283 52.3
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.8e-68 263.8 343 46.1
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 3.3e-67 259.6 305 49.2
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 4.3e-67 259.2 344 47.7
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 7.4e-67 258.5 290 53.1
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 9.6e-67 258.1 324 46.9
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.6e-66 257.3 340 46.8
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.8e-66 256.5 346 45.1
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 3.7e-66 256.1 343 43.4
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 4.8e-66 255.8 345 44.3
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 3.1e-65 253.1 344 44.8
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.0e-64 250.4 198 65.7
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 3.4e-64 249.6 345 44.9
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 1.3e-63 247.7 347 43.8
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 2.2e-63 246.9 281 46.6
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 6.5e-63 245.4 344 44.8
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 8.4e-63 245.0 347 43.5
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 9.3e-62 241.5 287 47.4
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 9.3e-62 241.5 351 42.7
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 3.5e-61 239.6 344 43.6
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 8.7e-60 235.0 344 43.6
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.3e-58 231.1 331 43.8
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.8e-57 227.3 336 41.1
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 9.0e-57 224.9 347 42.1
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 5.1e-52 209.1 340 38.2
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.3e-50 204.5 137 70.1
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 6.3e-50 202.2 338 37.6
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 7.7e-48 195.3 336 38.7
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.7e-47 194.1 344 38.1
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.4e-46 191.0 240 43.8
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.5e-46 189.1 137 65.7
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 7.2e-46 188.7 129 68.2
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 3.6e-45 186.4 255 43.1
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 3.0e-44 183.3 208 44.7
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.5e-40 171.0 340 37.6
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 4.8e-34 149.4 301 37.5
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 2.6e-32 143.7 324 36.1
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 3.6e-29 133.3 103 58.3
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 5.7e-11 72.8 132 37.9
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 2.8e-10 70.5 250 24.8
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.4e-09 68.2 43 72.1
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 3.8e-07 60.1 203 33.5


User provided reference genes

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