Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 0.0e+00 2947.1 1540 100.0
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 0.0e+00 2857.0 1581 95.4
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 0.0e+00 2302.3 1586 79.4
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 0.0e+00 2296.5 1320 92.1
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 0.0e+00 2249.2 1576 76.7
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 0.0e+00 2235.7 1607 75.5
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 0.0e+00 2082.8 1584 73.0
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1152.9 1623 47.7
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1097.8 1722 43.6
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 7.4e-311 1071.2 1611 46.1
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 1.3e-275 954.1 1698 41.6
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 3.3e-271 939.5 1632 41.7
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.0e-264 917.9 1631 42.7
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.4e-261 907.5 1600 43.4
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 1.4e-261 907.5 1616 41.2
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 2.0e-260 903.7 1624 40.8
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 3.4e-260 902.9 1610 41.8
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 2.2e-259 900.2 1638 41.5
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 6.4e-259 898.7 1715 39.6
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 8.4e-259 898.3 1627 41.5
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 3.2e-258 896.3 1643 41.2
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 7.8e-257 891.7 1612 42.1
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 8.7e-256 888.3 1658 40.9
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 1.9e-255 887.1 1658 41.0
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.9e-255 887.1 1578 41.6
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.7e-251 874.0 1637 41.2
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 1.9e-250 870.5 1627 40.6
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 4.2e-250 869.4 1624 40.3
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 3.5e-249 866.3 1631 39.7
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 2.3e-248 863.6 1648 40.4
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.9e-247 860.5 1599 41.9
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 6.2e-246 855.5 1616 40.8
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.5e-244 850.9 1626 39.4
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.5e-244 850.9 1594 40.4
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 3.8e-243 846.3 1626 39.3
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 4.2e-242 842.8 1595 41.3
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 6.0e-241 839.0 1631 39.9
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.0e-240 838.2 1620 39.0
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 6.7e-240 835.5 1647 39.6
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 3.3e-239 833.2 1636 41.8
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 1.6e-238 830.9 1639 40.8
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.4e-237 827.0 1619 38.8
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 4.0e-237 826.2 1667 39.8
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.5e-236 824.3 1611 39.0
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.9e-235 819.3 1629 38.7
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.1e-234 818.1 1637 38.5
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 1.4e-234 817.8 1641 39.8
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 4.2e-234 816.2 1664 38.2
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 7.1e-234 815.5 1666 39.0
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 2.1e-233 813.9 1677 37.6
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 4.6e-233 812.8 1672 37.9
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.3e-232 810.4 1664 39.1
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 1.5e-228 797.7 1641 39.4
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 7.6e-228 795.4 1293 44.4
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.6e-225 787.7 1627 39.0
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.5e-223 781.2 1611 38.7
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 5.3e-221 772.7 1596 39.3
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 3.8e-219 766.5 1654 39.0
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.4e-218 764.6 1636 38.3
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 1.9e-218 764.2 1612 38.3
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 5.3e-213 746.1 1614 38.3
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 2.6e-212 743.8 1616 37.9
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 1.1e-210 738.4 1615 38.0
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 1.1e-210 738.4 1683 37.0
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 2.6e-207 727.2 1565 39.2
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 4.4e-207 726.5 1610 37.5
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 4.5e-204 716.5 1624 36.9
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 2.3e-200 704.1 1571 37.3
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 7.4e-199 699.1 1667 36.1
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.7e-198 696.8 1641 36.4
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 2.2e-195 687.6 1635 36.3
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 3.3e-191 673.7 1597 36.4
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 2.2e-190 671.0 1630 37.4
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 5.9e-188 662.9 1611 35.3
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 8.0e-185 652.5 1606 36.2
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.0e-184 652.1 1646 36.9
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 9.8e-183 645.6 1630 35.2
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.7e-180 636.0 1185 40.9
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.7e-179 634.8 1758 34.8
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.7e-177 626.7 1622 34.2
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.0e-176 625.5 1527 36.1
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 2.8e-174 617.5 1620 33.3
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 3.1e-168 597.4 1697 34.2
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 4.0e-168 597.0 1648 35.7
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 7.0e-165 586.3 1559 35.0
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 9.2e-165 585.9 1624 33.6
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 2.3e-163 581.3 1577 34.6
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 8.6e-163 579.3 1440 35.6
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 7.5e-159 566.2 1584 34.7
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 2.9e-158 564.3 1599 36.1
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.7e-158 563.9 1632 33.8
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 4.3e-154 550.4 1573 33.9
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 4.7e-153 547.0 1701 33.6
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 1.7e-147 528.5 1708 32.4
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 3.0e-147 527.7 1566 33.4
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 5.2e-144 516.9 1632 32.7
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 6.8e-144 516.5 694 48.4
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 4.4e-143 513.8 1611 31.7
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 1.7e-139 501.9 1612 31.9
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 1.5e-138 498.8 1584 32.1
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 9.6e-138 496.1 1398 34.7
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 2.4e-133 481.5 766 43.6
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 4.2e-133 480.7 1654 31.1
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.2e-132 479.2 1380 33.0
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 2.7e-132 478.0 1617 31.2
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.7e-132 478.0 1634 31.2
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 6.0e-132 476.9 1612 31.3
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 1.3e-131 475.7 1621 31.5
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 1.7e-131 475.3 1620 31.5
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 6.6e-131 473.4 1616 31.1
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 9.9e-127 459.5 1639 30.8
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 6.9e-120 436.8 1617 30.3
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 2.2e-118 431.8 1232 34.5
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 3.8e-118 431.0 1622 30.8
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 2.1e-116 425.2 1640 30.6
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.3e-115 422.5 1637 30.2
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 5.3e-112 410.6 1571 29.8
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 3.4e-111 407.9 1612 29.4
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 6.5e-110 403.7 1579 30.1
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.7e-105 387.9 332 63.6
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 4.1e-104 384.4 1688 29.6
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.2e-102 378.6 1494 31.0
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 7.7e-95 353.6 982 33.0
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-93 349.7 688 39.2
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 3.5e-87 328.2 1552 27.9
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.2e-74 286.6 1539 28.8
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.6e-71 276.2 1234 31.3
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.7e-70 272.7 193 76.2
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 8.3e-65 253.8 1657 26.3
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 4.1e-64 251.5 478 41.4
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 5.5e-61 241.1 204 67.2
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.1e-60 237.7 484 39.3
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.3e-57 229.9 1276 28.0
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 8.3e-57 227.3 1273 27.7
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.0e-55 222.6 826 31.6
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 1.7e-54 219.5 561 38.0
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 3.4e-50 205.3 203 56.7
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.7e-46 193.0 215 56.7
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.2e-35 154.8 483 32.5
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.8e-34 151.4 499 34.1
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.2e-32 145.6 1273 26.6
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.1e-28 132.9 88 77.3
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.8e-28 132.5 386 36.0
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 6.8e-27 127.9 538 34.8
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.9e-25 121.7 180 45.0
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 5.4e-24 118.2 482 31.5
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.1e-22 111.7 523 30.6
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.8e-20 105.9 523 31.2
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.3e-17 97.1 188 37.8
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 2.2e-17 96.3 506 29.6
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.2e-17 96.3 137 46.7
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.1e-16 94.0 235 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 6.0e-15 88.2 692 27.5
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 7.9e-15 87.8 162 42.0
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.7e-14 86.7 195 35.9
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.5e-13 82.8 204 33.3
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.1e-12 79.7 87 48.3
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 6.2e-12 78.2 169 36.7
CAN.G181.47 Capsicum annuum HOM05D002907 ORTHO05D005554 2.0e-10 73.2 63 69.8
CAN.G834.10 Capsicum annuum HOM05D004650 ORTHO05D005715 7.6e-10 71.2 50 66.0
CAN.G1640.15 Capsicum annuum HOM05D000493 ORTHO05D015024 7.1e-08 64.7 71 52.1
CAN.G419.24 Capsicum annuum HOM05D002907 ORTHO05D005554 7.1e-08 64.7 56 67.9
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 2.3e-06 59.7 142 39.4
CAN.G1578.14 Capsicum annuum HOM05D038380 ORTHO05D015024 3.9e-06 58.9 45 73.3
CAN.G542.11 Capsicum annuum HOM05D002907 ORTHO05D005554 5.1e-06 58.5 70 54.3
Lsat_1_v5_gn_0_32021 Lactuca sativa HOM05D000147 ORTHO05D013131 8.7e-06 57.8 84 41.7


User provided reference genes

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