Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.7e-169 599.4 319 100.0
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 1.2e-164 583.2 319 98.1
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.4e-152 542.3 306 94.8
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 4.7e-140 501.5 315 83.8
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 1.4e-139 500.0 306 85.9
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 6.8e-139 497.7 315 82.9
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 5.4e-112 408.3 316 70.9
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 2.3e-110 402.9 318 67.6
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.5e-106 390.2 314 67.8
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 4.5e-106 388.7 314 67.5
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 4.2e-104 382.1 318 64.8
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 7.6e-98 361.3 303 65.7
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 4.2e-96 355.5 307 66.8
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 7.1e-96 354.8 309 65.7
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 1.8e-94 350.1 352 56.2
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 5.1e-94 348.6 309 64.4
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 3.1e-91 339.3 314 61.1
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 6.9e-91 338.2 312 62.5
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 1.7e-89 333.6 337 56.1
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 2.9e-89 332.8 319 57.1
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 8.7e-86 321.2 306 58.8
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 6.9e-83 311.6 366 50.5
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 3.4e-82 309.3 305 58.0
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 1.3e-81 307.4 317 54.9
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 5.0e-81 305.4 314 56.7
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 1.9e-80 303.5 312 55.8
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 4.2e-80 302.4 309 55.7
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 5.5e-80 302.0 310 54.5
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 1.6e-79 300.4 308 53.2
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 2.7e-79 299.7 330 53.0
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 7.9e-79 298.1 332 51.8
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 8.8e-78 294.7 315 54.0
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 2.5e-77 293.1 314 53.5
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 5.7e-77 292.0 306 55.6
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 5.7e-77 292.0 304 53.9
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 7.4e-77 291.6 340 51.5
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 2.8e-76 289.7 314 51.9
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 1.4e-75 287.3 314 51.9
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 3.1e-75 286.2 314 52.9
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 4.1e-75 285.8 301 51.8
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 2.0e-74 283.5 313 51.8
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 3.4e-74 282.7 347 49.9
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 7.7e-74 281.6 305 54.8
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 7.7e-74 281.6 305 53.1
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 7.7e-74 281.6 317 51.7
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 1.3e-73 280.8 293 56.7
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 6.5e-73 278.5 333 50.2
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 9.4e-72 274.6 341 49.0
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 1.2e-71 274.2 325 51.4
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.4e-70 270.8 318 49.7
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.8e-70 270.4 295 54.2
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.8e-70 270.4 302 52.3
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 3.9e-70 269.2 229 62.9
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 5.1e-70 268.9 340 47.4
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 2.0e-69 266.9 318 48.7
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 3.7e-68 262.7 308 50.0
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 6.3e-68 261.9 304 50.3
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 8.2e-68 261.5 315 48.9
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 3.1e-67 259.6 335 49.0
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.3e-67 258.8 311 48.9
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 5.3e-67 258.8 314 48.7
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 7.0e-67 258.5 306 51.3
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 9.1e-67 258.1 321 47.4
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 9.1e-67 258.1 321 46.7
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 2.6e-66 256.5 309 49.5
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 2.6e-66 256.5 306 49.7
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 4.5e-66 255.8 299 48.8
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 5.9e-66 255.4 260 56.9
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 1.3e-65 254.2 304 49.7
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.2e-65 253.4 318 47.5
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 3.8e-65 252.7 298 47.7
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 6.5e-65 251.9 302 47.7
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 6.5e-65 251.9 314 47.5
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 1.1e-64 251.1 310 47.7
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.2e-64 249.6 309 48.2
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 3.2e-64 249.6 318 47.2
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 9.4e-64 248.1 308 46.4
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 1.2e-63 247.7 318 47.8
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.2e-63 247.7 309 47.9
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 2.1e-63 246.9 297 45.8
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 4.7e-63 245.7 308 46.8
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 8.0e-63 245.0 230 56.5
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.4e-62 244.2 305 47.9
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.8e-62 243.8 300 48.0
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.0e-62 243.0 300 48.7
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 3.0e-62 243.0 351 45.3
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 4.0e-62 242.7 305 47.2
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 5.7e-61 238.8 295 49.8
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.3e-60 237.7 289 49.1
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.7e-60 237.3 314 47.1
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 8.2e-60 235.0 308 48.1
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 1.8e-59 233.8 323 43.0
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.4e-59 233.4 284 47.5
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 9.1e-59 231.5 350 42.9
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 5.9e-58 228.8 251 50.6
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 7.7e-58 228.4 230 52.2
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.0e-57 228.0 239 54.8
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.3e-57 227.6 254 49.2
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 2.9e-57 226.5 238 54.6
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 3.8e-57 226.1 258 50.0
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 2.5e-56 223.4 313 42.8
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 5.5e-56 222.2 313 42.5
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 9.4e-56 221.5 318 42.5
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 1.6e-55 220.7 315 42.2
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 2.1e-55 220.3 319 42.3
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 8.0e-55 218.4 316 43.0
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 2.3e-54 216.9 224 55.4
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 6.8e-54 215.3 313 40.9
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 1.2e-53 214.5 313 39.9
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 1.5e-53 214.2 310 40.0
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 2.0e-53 213.8 310 40.0
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.0e-53 213.8 321 39.6
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 3.4e-53 213.0 313 40.3
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 5.7e-53 212.2 300 45.0
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 2.0e-50 203.8 189 59.8
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.0e-49 201.4 279 43.0
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.3e-49 201.1 293 42.0
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 1.7e-49 200.7 311 39.2
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 2.2e-49 200.3 311 38.9
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.5e-48 196.8 305 38.0
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 1.2e-47 194.5 297 40.7
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 8.0e-47 191.8 194 51.5
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.4e-46 191.0 289 43.6
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 1.2e-45 188.0 298 39.9
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 4.9e-44 182.6 308 39.9
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 1.1e-43 181.4 250 46.8
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.0e-41 174.9 295 39.0
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 5.6e-40 169.1 226 44.7
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 5.7e-37 159.1 306 36.3
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 3.5e-34 149.8 324 34.6
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.7e-33 147.5 223 44.8
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 5.0e-33 146.0 228 37.7
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.5e-32 144.4 137 52.6
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 2.3e-30 137.1 260 34.2
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 2.0e-29 134.0 212 38.2
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 1.3e-25 121.3 152 40.8
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 2.3e-22 110.5 149 41.6
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 7.5e-21 105.5 149 41.6
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 7.5e-21 105.5 210 33.8
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 1.7e-20 104.4 192 35.4
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 1.9e-19 100.9 233 31.3
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 2.4e-19 100.5 195 35.4
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 6.0e-18 95.9 235 31.1
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 7.3e-16 89.0 65 66.2
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 4.7e-15 86.3 180 32.2
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 5.2e-14 82.8 99 52.5
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.7e-12 77.8 127 31.5
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 4.9e-12 76.3 186 28.5
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 2.1e-10 70.9 127 32.3
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.3e-09 67.4 216 25.9
PRCOL_00005442 Prasinoderma coloniale HOM05D004617 ORTHO05D005531 2.3e-09 67.4 110 36.4
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 7.3e-08 62.4 100 40.0
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 1.2e-07 61.6 83 44.6


User provided reference genes

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