Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g111700.3 Solanum lycopersicum HOM05D004993 ORTHO05D008532 3.4e-197 691.4 338 100.0
Sopen03g030820 Solanum pennellii HOM05D004993 ORTHO05D008532 8.4e-188 660.2 338 96.2
PGSC0003DMG402001731 Solanum tuberosum HOM05D004993 ORTHO05D008532 2.2e-164 582.4 343 87.8
Nitab4.5_0000582g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 4.7e-146 521.5 351 77.5
CAN.G630.88 Capsicum annuum HOM05D004993 ORTHO05D008532 7.5e-136 487.6 351 74.9
Hma1.2p1_0862F.1_g229950 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 1.3e-127 460.3 343 68.2
Lj3A1018T65 Lonicera japonica HOM05D004993 ORTHO05D008532 2.2e-127 459.5 283 79.2
Peaxi162Scf00004g01611 Petunia axillaris HOM05D004993 ORTHO05D008532 3.5e-125 452.2 287 78.4
MSTRG.7682 Avicennia marina HOM05D004993 ORTHO05D008532 1.0e-124 450.7 339 67.3
Gorai.008G186000 Gossypium raimondii HOM05D004993 ORTHO05D008532 2.9e-124 449.1 264 79.9
Gohir.D12G173500 Gossypium hirsutum HOM05D004993 ORTHO05D008532 5.0e-124 448.4 264 79.9
MD16G1046900 Malus domestica HOM05D004993 ORTHO05D008532 5.0e-124 448.4 319 70.2
Prupe.1G306400 Prunus persica HOM05D004993 ORTHO05D008532 6.6e-124 448.0 273 77.7
Gorai.008G185400 Gossypium raimondii HOM05D004993 ORTHO05D008532 8.6e-124 447.6 281 75.4
FvH4_4g27971 Fragaria vesca HOM05D004993 ORTHO05D008532 1.1e-123 447.2 284 76.4
Cc11_g10510 Coffea canephora HOM05D004993 ORTHO05D008532 1.5e-123 446.8 317 70.3
Gohir.D12G172900 Gossypium hirsutum HOM05D004993 ORTHO05D008532 1.5e-123 446.8 281 75.1
Nitab4.5_0004719g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 3.3e-123 445.7 348 69.8
VMungo1215G2957 Vigna mungo HOM05D004993 ORTHO05D008532 7.3e-123 444.5 295 74.9
Gohir.A12G170200 Gossypium hirsutum HOM05D004993 ORTHO05D008532 9.5e-123 444.1 264 79.2
Gohir.A12G169600 Gossypium hirsutum HOM05D004993 ORTHO05D008532 1.2e-122 443.7 278 75.2
CSS0044433 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 1.6e-122 443.4 345 66.4
Cfa018620 Carpinus fangiana HOM05D004993 ORTHO05D008532 1.6e-122 443.4 302 71.5
Phvul.003G028100 Phaseolus vulgaris HOM05D004993 ORTHO05D008532 2.1e-122 443.0 325 70.2
FAN07G2608 Fragaria x ananassa HOM05D004993 ORTHO05D008532 2.8e-122 442.6 284 75.4
Lsat_1_v5_gn_4_20101 Lactuca sativa HOM05D004993 ORTHO05D008532 2.8e-122 442.6 341 68.0
Ciclev10031998m.g Citrus clementina HOM05D004993 ORTHO05D008532 3.6e-122 442.2 320 68.4
CANSAT64G2606 Cannabis sativa HOM05D004993 ORTHO05D008532 4.7e-122 441.8 294 73.8
Lj2g0001269 Lotus japonicus HOM05D004993 ORTHO05D008532 6.1e-122 441.4 274 77.0
Thecc.02G359900 Theobroma cacao HOM05D004993 ORTHO05D008532 8.0e-122 441.0 264 78.4
TAR371G0197 Trochodendron aralioides HOM05D004993 ORTHO05D008532 1.0e-121 440.7 306 71.6
FAN17G0685 Fragaria x ananassa HOM05D004993 ORTHO05D008532 1.4e-121 440.3 284 75.7
GSVIVG01011941001 Vitis vinifera HOM05D004993 ORTHO05D008532 1.8e-121 439.9 342 66.1
TWI31G0395 Tripterygium wilfordii HOM05D004993 ORTHO05D008532 5.2e-121 438.3 325 67.4
CiPaw.16G003600 Carya illinoinensis HOM05D004993 ORTHO05D008532 6.8e-121 438.0 262 79.4
Glyma.02G098700 Glycine max HOM05D004993 ORTHO05D008532 1.2e-120 437.2 274 76.3
Potri.008G117600 Populus trichocarpa HOM05D004993 ORTHO05D008532 1.2e-120 437.2 312 69.9
RcHm_v2.0_Chr4g0435691 Rosa chinensis HOM05D004993 ORTHO05D008532 1.5e-120 436.8 274 75.9
CsaV3_5G034030 Cucumis sativus L. HOM05D004993 ORTHO05D008532 5.7e-120 434.9 264 78.4
RhsimUnG0136600 Rhododendron simsii HOM05D004993 ORTHO05D008532 7.5e-120 434.5 255 79.6
TPR.G38312 Trifolium pratense HOM05D004993 ORTHO05D008532 7.5e-120 434.5 277 75.8
Manes.14G098500 Manihot esculenta HOM05D004993 ORTHO05D008532 9.8e-120 434.1 305 70.5
Nn3g17764 Nelumbo nucifera HOM05D004993 ORTHO05D008532 9.8e-120 434.1 320 68.8
SalBow8G3546 Salvia bowleyana HOM05D004993 ORTHO05D008532 9.8e-120 434.1 335 66.6
Sc04g0006640 Simmondsia chinensis HOM05D004993 ORTHO05D008532 2.2e-119 433.0 266 77.1
HanXRQChr17g0567931 Helianthus annuus HOM05D004993 ORTHO05D008532 2.9e-119 432.6 338 66.0
PSO063G3032 Papaver somniferum HOM05D004993 ORTHO05D008532 3.7e-119 432.2 281 74.0
Duzib251G0893 Durio zibethinus HOM05D004993 ORTHO05D008532 1.4e-118 430.3 351 64.1
MELO3C012219.2 Cucumis melo HOM05D004993 ORTHO05D008532 2.4e-118 429.5 262 77.9
Migut.O00833 Erythranthe guttata HOM05D004993 ORTHO05D008532 3.2e-118 429.1 277 73.6
arahy.Tifrunner.gnm1.ann1.5ZE4QE Arachis hypogaea HOM05D004993 ORTHO05D008532 7.0e-118 427.9 262 77.5
arahy.Tifrunner.gnm1.ann1.VJ59XU Arachis hypogaea HOM05D004993 ORTHO05D008532 7.0e-118 427.9 262 77.5
Lalb_Chr17g0341941 Lupinus albus HOM05D004993 ORTHO05D008532 7.0e-118 427.9 274 73.4
COL.COLO4_07879 Corchorus olitorius HOM05D004993 ORTHO05D008532 9.2e-118 427.6 345 64.9
THA.LOC104808209 Tarenaya hassleriana HOM05D004993 ORTHO05D008532 1.2e-117 427.2 264 75.0
AUR62002913 Chenopodium quinoa HOM05D004993 ORTHO05D008532 2.0e-117 426.4 346 63.9
PGR102G1294 Punica granatum HOM05D004993 ORTHO05D008532 1.3e-116 423.7 262 76.0
BcaB03g12171 Brassica carinata HOM05D004993 ORTHO05D008532 2.3e-116 422.9 297 69.4
Aqoxy3G03926 Aquilegia oxysepala HOM05D004993 ORTHO05D008532 3.0e-116 422.5 291 70.8
unitig_8.g3446 Utricularia gibba HOM05D004993 ORTHO05D008532 3.0e-116 422.5 272 73.9
MBI16_g25106_MAGBIO Magnolia biondii HOM05D004993 ORTHO05D008532 3.9e-116 422.2 265 73.2
SGA_v2.0_scaffold209G42027 Striga asiatica HOM05D004993 ORTHO05D008532 6.6e-116 421.4 300 70.7
Aa31LG6G5980 Aethionema arabicum HOM05D004993 ORTHO05D008532 8.6e-116 421.0 318 66.7
Sp1g25580 Schrenkiella parvula HOM05D004993 ORTHO05D008532 1.1e-115 420.6 313 66.5
A08p24930 Brassica napus HOM05D004993 ORTHO05D008532 1.9e-115 419.9 313 65.5
AUR62035273 Chenopodium quinoa HOM05D004993 ORTHO05D008532 2.5e-115 419.5 268 73.1
BraA08t34448Z Brassica rapa HOM05D004993 ORTHO05D008532 9.5e-115 417.5 313 65.5
Haze_17449 Corylus avellana HOM05D004993 ORTHO05D008532 9.5e-115 417.5 356 61.0
Dinv16501 Davidia involucrata HOM05D004993 ORTHO05D008532 9.5e-115 417.5 311 67.5
Sed0024124 Sechium edule HOM05D004993 ORTHO05D008532 9.5e-115 417.5 303 68.6
ECA234G2629 Erigeron canadensis HOM05D004993 ORTHO05D008532 1.2e-114 417.2 263 76.4
C03p76040 Brassica napus HOM05D004993 ORTHO05D008532 1.6e-114 416.8 289 69.2
BolC3t19860H Brassica oleracea HOM05D004993 ORTHO05D008532 2.8e-114 416.0 289 68.9
BcaC01g00125 Brassica carinata HOM05D004993 ORTHO05D008532 3.6e-114 415.6 289 69.2
CSS0008970 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 1.4e-113 413.7 275 74.2
AL1G43530 Arabidopsis lyrata HOM05D004993 ORTHO05D008532 3.1e-113 412.5 321 65.1
EL10Ac6g14467 Beta vulgaris HOM05D004993 ORTHO05D008532 3.1e-113 412.5 261 74.3
Carub.0001s2791 Capsella rubella HOM05D004993 ORTHO05D008532 4.0e-113 412.1 294 67.7
AT1G29700 Arabidopsis thaliana HOM05D004993 ORTHO05D008532 5.2e-113 411.8 321 64.8
CARHR029050 Cardamine hirsuta HOM05D004993 ORTHO05D008532 5.2e-113 411.8 294 68.7
QL01p044817 Quercus lobata HOM05D004993 ORTHO05D008532 1.2e-112 410.6 313 66.1
Atru.chr11.1340 Acer truncatum HOM05D004993 ORTHO05D008532 2.0e-112 409.8 269 74.3
vmacro01368 Vaccinium macrocarpon HOM05D004993 ORTHO05D008532 3.7e-111 405.6 324 65.1
Sabra08G0089200 Salix brachista HOM05D004993 ORTHO05D008532 2.7e-109 399.4 411 53.8
Medtr5g054360 Medicago truncatula HOM05D004993 ORTHO05D008532 1.3e-108 397.1 296 68.2
ATR0681G095 Amborella trichopoda HOM05D004993 ORTHO05D008532 4.7e-106 388.7 258 71.7
CDE04G2310 Ceratophyllum demersum HOM05D004993 ORTHO05D008532 6.2e-106 388.3 295 64.4
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 8.9e-105 384.4 410 51.7
HPP92_005309 Vanilla planifolia HOM05D004993 ORTHO05D008532 1.7e-103 380.2 259 68.7
Eucgr.B03043 Eucalyptus grandis HOM05D004993 ORTHO05D008532 3.7e-103 379.0 261 71.6
PSO782G1223 Papaver somniferum HOM05D004993 ORTHO05D008532 3.0e-100 369.4 276 67.4
Thhalv10009499m.g Eutrema salsugineum HOM05D004993 ORTHO05D008532 1.6e-93 347.1 269 63.6
Ah.02g127080 Amaranthus hybridus HOM05D004993 ORTHO05D008532 1.1e-89 334.3 211 77.3
SMO361G0287 Selaginella moellendorffii HOM05D004993 ORTHO05D008532 1.8e-89 333.6 259 60.2
Mapoly0053s0088 Marchantia polymorpha HOM05D004993 ORTHO05D008532 4.0e-89 332.4 298 52.3
MD13G1045600 Malus domestica HOM05D004993 ORTHO05D008532 1.4e-86 323.9 274 60.9
CiPaw.15G004200 Carya illinoinensis HOM05D004993 ORTHO05D008532 4.6e-85 318.9 270 61.5
Os12g0641300 Oryza sativa ssp. japonica HOM05D004993 ORTHO05D008532 6.0e-85 318.5 276 60.1
Pp3c15_25860 Physcomitrium patens HOM05D004993 ORTHO05D008532 1.3e-82 310.8 262 55.7
Zm00001eb133920 Zea mays HOM05D004993 ORTHO05D008532 1.3e-82 310.8 290 57.6
AagrBONN_evm.TU.Sc2ySwM_344.778 Anthoceros agrestis HOM05D004993 ORTHO05D008532 1.4e-78 297.4 240 58.3
Migut.L01091 Erythranthe guttata HOM05D004993 ORTHO05D008532 9.0e-73 278.1 157 80.3
Psat2g091800 Pisum sativum HOM05D004993 ORTHO05D008532 1.5e-64 250.8 162 73.5
Actinidia38387 Actinidia chinensis HOM05D004993 ORTHO05D008532 7.6e-64 248.4 147 78.9
Hma1.2p1_0862F.1_g229960 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 8.7e-60 235.0 163 72.4
Ca_20419_v3 Cicer arietinum L. HOM05D004993 ORTHO05D008532 2.9e-55 219.9 135 79.3
Cpa.g.c35723 Carica papaya HOM05D004993 ORTHO05D008532 1.2e-53 214.5 134 73.9
CBR_g46806 Chara braunii HOM05D004993 ORTHO05D008532 3.3e-51 206.5 269 41.6
ECA248G2500 Erigeron canadensis HOM05D004993 ORTHO05D008532 1.4e-49 201.1 213 52.1
SEGI_28994 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 2.2e-42 177.2 134 60.4
Actinidia13671 Actinidia chinensis HOM05D004993 ORTHO05D008532 1.3e-39 167.9 98 80.6
Pp3c27_8380 Physcomitrium patens HOM05D004993 ORTHO05D008532 5.0e-31 139.4 284 33.1
MCO14G082 Micromonas commoda HOM05D004993 ORTHO05D008532 7.2e-30 135.6 278 33.8
Cre10.g442950 Chlamydomonas reinhardtii HOM05D004993 ORTHO05D008532 2.7e-29 133.7 320 28.1
SEGI_13194 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 7.0e-17 92.4 50 74.0
CARHR029040 Cardamine hirsuta HOM05D004993 ORTHO05D008532 3.5e-16 90.1 99 50.5
Migut.G01033 Erythranthe guttata HOM05D004993 ORTHO05D008532 8.9e-12 75.5 52 63.5


User provided reference genes

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