Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 4.8e-83 311.2 168 100.0
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 4.8e-83 311.2 168 100.0
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 2.1e-67 259.2 170 84.1
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 4.5e-57 224.9 170 78.8
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.3e-51 206.8 166 68.7
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 1.3e-51 206.8 166 67.5
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 8.2e-51 204.1 164 69.5
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.3e-48 196.8 164 70.1
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 9.4e-47 190.7 167 64.1
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.8e-45 186.4 166 62.7
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 1.1e-44 183.7 171 60.2
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 2.6e-44 182.6 166 62.0
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 3.3e-44 182.2 153 66.0
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 3.3e-44 182.2 168 60.1
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 2.8e-43 179.1 170 61.8
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 4.8e-43 178.3 163 59.5
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 8.2e-43 177.6 166 60.2
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 1.1e-42 177.2 165 62.4
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 5.3e-42 174.9 169 57.4
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 5.3e-42 174.9 167 60.5
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 5.3e-42 174.9 151 63.6
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 3.5e-41 172.2 164 60.4
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 5.9e-41 171.4 166 59.0
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 5.9e-41 171.4 167 58.1
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 1.3e-40 170.2 162 60.5
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.7e-40 169.9 164 58.5
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.2e-40 169.5 158 58.2
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 8.5e-40 167.5 170 58.2
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 1.1e-39 167.2 160 58.1
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.5e-39 166.8 160 58.8
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.9e-39 166.4 172 55.8
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 3.2e-39 165.6 164 56.1
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 4.2e-39 165.2 160 58.1
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 4.2e-39 165.2 156 60.9
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 7.2e-39 164.5 151 60.3
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 9.4e-39 164.1 155 58.7
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 1.2e-38 163.7 160 61.2
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.2e-38 163.7 152 60.5
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.6e-38 163.3 184 54.9
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 2.1e-38 162.9 160 61.2
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 4.7e-38 161.8 144 58.3
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 8.0e-38 161.0 163 56.4
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.0e-37 160.6 160 58.8
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.0e-37 160.6 164 56.7
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.4e-37 160.2 165 59.4
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.4e-37 160.2 164 55.5
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.4e-37 160.2 164 56.7
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.4e-37 160.2 166 56.0
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.8e-37 159.8 124 69.4
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 2.3e-37 159.5 160 57.5
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 4.0e-37 158.7 164 56.1
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 5.2e-37 158.3 173 56.6
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 8.8e-37 157.5 160 55.6
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.8e-37 157.5 165 57.0
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 8.8e-37 157.5 154 60.4
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 2.0e-36 156.4 165 58.2
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 7.5e-36 154.5 164 55.5
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 7.5e-36 154.5 160 53.1
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 9.7e-36 154.1 160 58.8
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.3e-35 153.7 168 54.8
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 2.2e-35 152.9 156 59.6
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 4.8e-35 151.8 156 56.4
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 1.8e-34 149.8 168 56.0
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 2.4e-34 149.4 167 55.7
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 2.4e-34 149.4 145 59.3
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.4e-34 149.4 169 55.0
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 2.4e-34 149.4 163 56.4
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 3.1e-34 149.1 156 53.8
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 4.1e-34 148.7 154 52.6
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 5.3e-34 148.3 152 58.6
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 1.2e-33 147.1 157 58.0
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 1.2e-33 147.1 157 58.0
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.0e-33 146.4 158 57.6
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 2.0e-33 146.4 126 65.1
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 2.0e-33 146.4 169 51.5
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 5.9e-33 144.8 153 56.9
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 1.3e-32 143.7 171 55.0
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 6.5e-32 141.4 159 54.7
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 8.5e-32 141.0 196 46.4
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.9e-31 139.8 147 55.8
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 3.2e-31 139.0 159 50.3
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.2e-31 139.0 165 50.9
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.4e-31 137.5 164 51.2
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.2e-30 137.1 84 84.5
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.2e-30 137.1 159 54.1
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 2.1e-30 136.3 137 56.9
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.7e-30 136.0 156 55.1
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.6e-30 135.6 156 54.5
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 3.6e-30 135.6 125 60.8
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 6.1e-30 134.8 161 52.8
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 6.1e-30 134.8 161 53.4
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 8.0e-30 134.4 157 50.3
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 1.0e-29 134.0 166 51.8
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.4e-29 133.7 156 53.2
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.2e-29 131.7 156 53.8
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 8.8e-29 131.0 189 47.1
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 2.0e-28 129.8 136 56.6
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 2.0e-28 129.8 136 56.6
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 2.0e-28 129.8 172 51.2
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.6e-28 129.4 164 49.4
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.6e-28 129.4 164 50.0
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 4.4e-28 128.6 187 46.0
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.5e-28 127.9 156 51.9
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 9.8e-28 127.5 147 50.3
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.7e-27 126.7 151 49.0
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 2.2e-27 126.3 147 50.3
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 4.8e-27 125.2 168 49.4
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 1.1e-26 124.0 150 50.7
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.1e-26 122.1 156 50.6
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 5.4e-26 121.7 153 47.7
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.6e-25 120.2 151 49.7
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.7e-25 119.4 112 61.6
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.7e-25 119.4 162 46.3
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 3.5e-25 119.0 113 62.8
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 2.9e-24 115.9 169 46.2
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 8.5e-24 114.4 100 63.0
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 1.1e-23 114.0 143 51.7
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.5e-23 113.6 154 48.1
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 1.0e-21 107.5 154 42.9
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 5.2e-21 105.1 109 54.1
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 1.5e-20 103.6 161 43.5
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.6e-20 102.8 96 59.4
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.2e-17 94.0 117 52.1
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 1.2e-17 94.0 169 40.2
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.6e-17 93.6 102 52.0
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 1.6e-17 93.6 117 45.3
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 2.0e-17 93.2 111 52.3
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 5.9e-17 91.7 117 51.3
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.3e-16 90.5 96 51.0
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.2e-14 84.0 81 63.0
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.1e-14 83.2 82 56.1
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 2.8e-14 82.8 149 43.0
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 2.3e-13 79.7 56 67.9
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 2.3e-13 79.7 143 40.6
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 1.3e-11 73.9 92 48.9
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.4e-11 71.6 76 51.3
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.8e-10 70.1 75 50.7
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.8e-10 70.1 75 50.7
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.4e-10 69.7 77 51.9
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.9e-09 65.1 54 59.3
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 7.8e-09 64.7 84 46.4
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 8.6e-08 61.2 61 55.7
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 8.6e-08 61.2 66 54.5
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 3.6e-06 55.8 96 46.9
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.6e-06 55.8 61 52.5


User provided reference genes

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