Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g098680.3 Solanum lycopersicum HOM05D025152 ORTHO05D011982 2.6e-127 458.8 232 100.0
Sopen03g029400 Solanum pennellii HOM05D025152 ORTHO05D011982 5.5e-122 441.0 227 95.2
PGSC0003DMG400010148 Solanum tuberosum HOM05D025152 ORTHO05D011982 2.7e-108 395.6 228 88.2
CAN.G929.8 Capsicum annuum HOM05D000535 ORTHO05D011982 2.2e-54 216.5 229 52.8
PGSC0003DMG400010170 Solanum tuberosum HOM05D000535 ORTHO05D011982 1.6e-52 210.3 225 53.3
Sopen03g029430 Solanum pennellii HOM05D025152 ORTHO05D011982 2.8e-49 199.5 230 51.3
Solyc03g098720.3 Solanum lycopersicum HOM05D025152 ORTHO05D011982 1.6e-44 183.7 230 49.1
Nitab4.5_0001495g0130 Nicotiana tabacum HOM05D000535 ORTHO05D011982 3.2e-37 159.5 233 47.6
Nitab4.5_0004423g0010 Nicotiana tabacum HOM05D000535 ORTHO05D011982 2.7e-36 156.4 233 48.5
Nitab4.5_0000425g0210 Nicotiana tabacum HOM05D000535 ORTHO05D011982 1.3e-25 120.9 225 39.1
Nitab4.5_0001486g0010 Nicotiana tabacum HOM05D000535 ORTHO05D011982 1.1e-24 117.9 229 38.4
Nitab4.5_0000425g0230 Nicotiana tabacum HOM05D000535 ORTHO05D011982 1.8e-24 117.1 227 36.6
CAN.G929.7 Capsicum annuum HOM05D000535 ORTHO05D011982 3.6e-20 102.8 219 35.6
PGSC0003DMG400008546 Solanum tuberosum HOM05D000535 ORTHO05D011982 3.6e-20 102.8 227 36.6
CAN.G765.33 Capsicum annuum HOM05D000535 ORTHO05D011982 3.9e-19 99.4 235 33.6
CAN.G765.34 Capsicum annuum HOM05D000535 ORTHO05D011982 5.1e-19 99.0 233 36.5
CAN.G765.31 Capsicum annuum HOM05D000002 ORTHO05D000001 8.2e-17 91.7 205 33.7
CAN.G765.29 Capsicum annuum HOM05D000535 ORTHO05D011982 1.4e-16 90.9 227 33.0
PGSC0003DMG400008536 Solanum tuberosum HOM05D000535 ORTHO05D011982 9.1e-16 88.2 181 33.7
CAN.G1156.34 Capsicum annuum HOM05D000535 ORTHO05D011982 4.5e-15 85.9 229 31.9
CAN.G765.30 Capsicum annuum HOM05D000535 ORTHO05D011982 2.2e-14 83.6 227 32.2
Cc00_g31050 Coffea canephora HOM05D000535 ORTHO05D000427 2.9e-14 83.2 228 33.3
PGSC0003DMG400046234 Solanum tuberosum HOM05D000535 ORTHO05D011982 1.1e-13 81.3 184 33.7
Ciclev10023465m.g Citrus clementina HOM05D000535 ORTHO05D000427 2.5e-13 80.1 224 30.8
Ciclev10023572m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.2e-13 79.3 224 31.2
Ciclev10022276m.g Citrus clementina HOM05D000535 ORTHO05D000427 5.5e-13 79.0 224 30.8
Ciclev10023257m.g Citrus clementina HOM05D000535 ORTHO05D000427 5.5e-13 79.0 224 31.2
Ciclev10021858m.g Citrus clementina HOM05D000535 ORTHO05D000427 7.2e-13 78.6 226 30.1
Cc10_g11700 Coffea canephora HOM05D000535 ORTHO05D000427 1.6e-12 77.4 226 31.0
Ah.03g132920 Amaranthus hybridus HOM05D000535 ORTHO05D000427 2.7e-12 76.6 165 35.8
Ciclev10022284m.g Citrus clementina HOM05D000535 ORTHO05D000427 2.7e-12 76.6 212 30.7
Cc10_g11720 Coffea canephora HOM05D000535 ORTHO05D000427 2.7e-12 76.6 226 30.5
Cc00_g04330 Coffea canephora HOM05D000535 ORTHO05D000427 1.0e-11 74.7 229 31.4
Cc00_g30520 Coffea canephora HOM05D000535 ORTHO05D000427 1.0e-11 74.7 229 31.9
Ciclev10022282m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.4e-11 74.3 224 30.4
Ciclev10023320m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.4e-11 74.3 224 30.4
Nitab4.5_0000477g0200 Nicotiana tabacum HOM05D000535 ORTHO05D000427 2.3e-11 73.6 168 34.5
Ciclev10023371m.g Citrus clementina HOM05D000535 ORTHO05D000427 3.0e-11 73.2 224 29.9
DCAR_011412 Daucus carota HOM05D000535 ORTHO05D000427 5.1e-11 72.4 195 30.3
Sabra04G0045700 Salix brachista HOM05D000535 ORTHO05D000427 5.1e-11 72.4 218 27.1
Cc00_g19300 Coffea canephora HOM05D000535 ORTHO05D000427 1.1e-10 71.2 219 28.3
Cc00_g28720 Coffea canephora HOM05D000535 ORTHO05D000427 1.5e-10 70.9 217 28.6
Nitab4.5_0002771g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 5.7e-10 68.9 171 32.2
AUR62005428 Chenopodium quinoa HOM05D000535 ORTHO05D000427 1.7e-09 67.4 136 33.1
Ah.03g132930 Amaranthus hybridus HOM05D000535 ORTHO05D000427 3.7e-09 66.2 202 31.7
Glyma.16G212400 Glycine max HOM05D000535 ORTHO05D000427 3.7e-09 66.2 191 31.4
Duzib205G0258 Durio zibethinus HOM05D000535 ORTHO05D000427 4.8e-09 65.9 225 26.7
Lj9C411T7 Lonicera japonica HOM05D000535 ORTHO05D000427 6.3e-09 65.5 214 31.8
Oeu057516.1 Olea europaea HOM05D000535 ORTHO05D000427 6.3e-09 65.5 213 29.1
Peaxi162Scf00643g00055 Petunia axillaris HOM05D000535 ORTHO05D000427 8.2e-09 65.1 231 29.4
Ciclev10024584m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.1e-08 64.7 161 33.5
Peaxi162Scf00643g00538 Petunia axillaris HOM05D000535 ORTHO05D000427 1.1e-08 64.7 193 29.5
Psat1g122280 Pisum sativum HOM05D000535 ORTHO05D000427 1.4e-08 64.3 214 28.5
VMungo0464G1147 Vigna mungo HOM05D000535 ORTHO05D000427 1.4e-08 64.3 193 30.6
CAN.G65.70 Capsicum annuum HOM05D000535 ORTHO05D000427 1.8e-08 63.9 225 28.0
Ciclev10023581m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.8e-08 63.9 224 28.6
COL.COLO4_08721 Corchorus olitorius HOM05D000535 ORTHO05D000427 1.8e-08 63.9 184 29.9
SGA_v2.0_scaffold25G10739 Striga asiatica HOM05D000535 ORTHO05D000427 2.4e-08 63.5 226 27.9
Medtr6g078100 Medicago truncatula HOM05D000535 ORTHO05D000427 3.1e-08 63.2 224 28.1
Psat1g122080 Pisum sativum HOM05D000535 ORTHO05D000427 3.1e-08 63.2 216 29.6
PGSC0003DMG400029534 Solanum tuberosum HOM05D000535 ORTHO05D000427 3.1e-08 63.2 197 28.9
Lsat_1_v5_gn_2_112140 Lactuca sativa HOM05D000535 ORTHO05D000427 5.3e-08 62.4 189 27.0
Potri.004G067800 Populus trichocarpa HOM05D000535 ORTHO05D000427 7.0e-08 62.0 222 29.3
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 7.0e-08 62.0 202 28.2
Thecc.05G198000 Theobroma cacao HOM05D000535 ORTHO05D000427 7.0e-08 62.0 196 27.0
TPR.G27457 Trifolium pratense HOM05D000535 ORTHO05D000427 7.0e-08 62.0 225 29.3
Dinv04608 Davidia involucrata HOM05D000535 ORTHO05D000427 9.1e-08 61.6 167 28.7
Lj5P167T32 Lonicera japonica HOM05D000535 ORTHO05D000427 9.1e-08 61.6 199 29.1
Nitab4.5_0003040g0040 Nicotiana tabacum HOM05D000535 ORTHO05D000427 9.1e-08 61.6 219 27.9
Gohir.A05G392100 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.2e-07 61.2 167 31.1
Gohir.D04G025000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.2e-07 61.2 167 31.1
Gorai.012G027600 Gossypium raimondii HOM05D000535 ORTHO05D000427 1.2e-07 61.2 167 31.1
DCAR_011411 Daucus carota HOM05D000535 ORTHO05D000427 1.5e-07 60.8 167 31.1
TPR.G27452 Trifolium pratense HOM05D000535 ORTHO05D000427 1.5e-07 60.8 224 29.5
EL10Ac3g06172 Beta vulgaris HOM05D000535 ORTHO05D000427 2.0e-07 60.5 196 27.6
Nitab4.5_0012105g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 2.6e-07 60.1 208 28.8
Duzib128G1043 Durio zibethinus HOM05D000535 ORTHO05D000427 3.4e-07 59.7 170 29.4
Solyc04g150105.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 3.4e-07 59.7 189 27.5
PGSC0003DMG400027054 Solanum tuberosum HOM05D000535 ORTHO05D000427 3.4e-07 59.7 222 27.5
CSS0003160 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 5.9e-07 58.9 156 30.1
CSS0030185 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 5.9e-07 58.9 194 26.8
DCAR_011421 Daucus carota HOM05D000535 ORTHO05D000427 5.9e-07 58.9 217 27.2
Lalb_Chr14g0370191 Lupinus albus HOM05D000535 ORTHO05D000427 5.9e-07 58.9 186 28.5
AUR62014089 Chenopodium quinoa HOM05D000535 ORTHO05D000427 7.7e-07 58.5 133 33.1
DCAR_011413 Daucus carota HOM05D000535 ORTHO05D000427 7.7e-07 58.5 226 27.0
HanXRQChr16g0506311 Helianthus annuus HOM05D000535 ORTHO05D000427 7.7e-07 58.5 187 28.3
HanXRQChr16g0506331 Helianthus annuus HOM05D000535 ORTHO05D000427 7.7e-07 58.5 187 28.3
Lj2g0000790 Lotus japonicus HOM05D000535 ORTHO05D000427 7.7e-07 58.5 170 29.4
Lj2g0002029 Lotus japonicus HOM05D000535 ORTHO05D000427 7.7e-07 58.5 170 29.4
Thecc.02G055700 Theobroma cacao HOM05D000535 ORTHO05D000427 7.7e-07 58.5 155 31.0
Rhsim08G0010100 Rhododendron simsii HOM05D000535 ORTHO05D000427 1.0e-06 58.2 218 28.0
Thecc.05G197900 Theobroma cacao HOM05D000535 ORTHO05D000427 1.3e-06 57.8 171 28.7
CSS0021540 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 2.9e-06 56.6 194 26.8
Medtr6g078070 Medicago truncatula HOM05D000535 ORTHO05D000427 2.9e-06 56.6 225 29.3
SalBow5G1184 Salvia bowleyana HOM05D000535 ORTHO05D000427 2.9e-06 56.6 197 26.9
DCAR_011416 Daucus carota HOM05D000535 ORTHO05D000427 3.8e-06 56.2 188 26.1
Phvul.004G130400 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 5.0e-06 55.8 178 28.7


User provided reference genes

Program Settings