Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 0.0e+00 1075.8 559 100.0
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 8.4e-310 1066.2 559 99.1
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 4.5e-303 1043.9 559 96.8
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.1e-236 822.4 559 78.7
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.1e-223 779.2 451 88.9
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 6.0e-223 777.7 557 74.3
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 9.9e-202 707.2 560 67.1
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 3.2e-200 702.2 546 67.0
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 3.0e-198 695.7 545 65.3
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.8e-196 689.1 578 67.0
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 2.2e-193 679.5 562 64.8
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 2.1e-188 662.9 562 63.0
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 1.1e-187 660.6 563 63.4
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 2.0e-186 656.4 549 63.6
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.3e-182 643.7 562 61.7
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 3.9e-182 642.1 544 62.5
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 4.3e-181 638.6 550 64.2
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.4e-179 633.6 562 61.2
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 5.5e-176 621.7 593 57.2
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 5.7e-173 611.7 545 60.0
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 4.1e-171 605.5 507 64.5
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 9.1e-171 604.4 542 60.0
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 2.9e-169 599.4 558 58.8
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 5.5e-168 595.1 543 58.0
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 6.1e-167 591.7 543 57.5
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.7e-164 583.6 542 59.8
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 9.1e-163 577.8 542 57.4
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.5e-162 577.0 552 57.2
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.5e-162 577.0 548 58.0
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 5.9e-162 575.1 556 57.9
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 2.9e-161 572.8 551 59.2
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 3.8e-161 572.4 560 57.7
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.1e-160 570.9 548 56.6
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.4e-160 570.5 547 58.1
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 2.5e-160 569.7 542 57.7
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 3.2e-160 569.3 540 58.0
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 7.2e-160 568.2 538 57.4
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 2.1e-159 566.6 539 59.4
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 4.7e-159 565.5 540 58.3
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.0e-158 564.3 542 57.0
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.4e-158 563.9 540 56.7
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 8.8e-158 561.2 540 57.4
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 8.8e-158 561.2 690 49.0
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.0e-157 560.1 542 56.5
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 5.7e-157 558.5 553 56.2
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 9.7e-157 557.8 544 56.1
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 2.2e-156 556.6 560 57.7
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.1e-155 552.7 544 56.2
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.6e-154 549.7 544 56.1
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.0e-153 547.7 547 54.7
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 2.9e-153 546.2 546 54.8
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 7.2e-152 541.6 551 55.4
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.2e-151 540.8 555 55.7
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 3.6e-151 539.3 523 56.0
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 2.3e-150 536.6 553 55.9
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.1e-147 527.7 522 55.2
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.4e-147 527.3 544 54.2
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 1.8e-147 526.9 542 53.5
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 3.1e-147 526.2 553 54.2
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 6.5e-145 518.5 547 54.3
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 9.4e-144 514.6 541 54.0
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.7e-143 513.1 540 53.9
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 6.1e-143 511.9 540 54.3
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 4.0e-142 509.2 540 53.7
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 4.4e-141 505.8 580 51.7
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.4e-141 505.8 540 53.7
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 3.7e-140 502.7 540 53.9
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 4.8e-140 502.3 540 53.1
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 6.3e-140 501.9 540 53.9
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 1.1e-139 501.1 474 56.8
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 3.1e-139 499.6 540 52.6
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 1.6e-138 497.3 541 51.9
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 7.7e-138 495.0 489 55.8
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 1.1e-136 491.1 538 53.3
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 7.2e-136 488.4 539 53.2
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 9.5e-136 488.0 538 52.8
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 5.2e-134 482.3 538 52.4
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 6.8e-134 481.9 538 52.4
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 4.4e-133 479.2 487 52.2
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 4.1e-131 472.6 541 51.4
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 4.5e-130 469.2 539 52.1
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 5.9e-130 468.8 538 50.7
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 7.8e-130 468.4 539 51.2
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.0e-129 468.0 538 51.1
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 2.3e-129 466.8 539 51.2
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 2.9e-129 466.5 539 51.2
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 8.6e-129 464.9 538 50.7
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.1e-128 464.5 538 50.7
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 3.1e-126 456.4 393 60.6
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 4.0e-126 456.1 528 50.9
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 5.2e-126 455.7 539 50.6
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 3.5e-122 443.0 481 52.4
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.5e-120 437.6 469 50.7
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 5.6e-120 435.6 387 60.7
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 3.7e-116 422.9 354 61.9
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 5.6e-112 409.1 350 61.1
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 4.4e-109 399.4 551 43.2
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 8.3e-108 395.2 540 46.9
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 1.5e-96 357.8 328 58.8
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.6e-95 354.4 394 47.2
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.4e-94 350.5 383 51.7
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 9.3e-83 312.0 281 60.5
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 2.7e-82 310.5 594 37.4
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 4.6e-82 309.7 521 39.9
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 1.3e-81 308.1 570 37.9
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 7.4e-80 302.4 384 45.6
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 2.8e-79 300.4 332 52.4
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 1.7e-76 291.2 496 40.3
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 2.9e-76 290.4 398 40.2
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 3.8e-76 290.0 357 47.6
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.4e-70 271.6 277 54.2
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 6.5e-68 262.7 217 60.8
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 2.5e-67 260.8 298 51.0
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.6e-63 248.1 263 49.8
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 1.5e-61 241.5 411 37.5
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.0e-60 238.8 161 70.8
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.0e-60 238.8 263 52.9
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.2e-59 233.8 160 73.8
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.8e-57 228.0 266 48.9
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 2.1e-50 204.5 155 66.5
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 8.8e-49 199.1 196 52.6
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.0e-40 171.4 121 73.6
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 3.1e-38 164.1 269 40.5
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.5e-37 160.6 158 54.4
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 1.4e-33 148.7 120 65.8
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 1.7e-31 141.7 139 59.0
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 4.1e-30 137.1 259 41.3
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.5e-27 126.7 194 42.8
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 7.2e-27 126.3 207 42.0
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 5.9e-21 106.7 102 60.8
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 4.6e-13 80.5 183 35.5
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 1.3e-12 79.0 94 50.0
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 1.3e-12 79.0 94 50.0
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 5.0e-12 77.0 103 47.6
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 2.5e-11 74.7 96 47.9
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 7.3e-11 73.2 81 45.7
CAN.G1235.8 Capsicum annuum HOM05D002513 ORTHO05D002720 2.8e-10 71.2 39 84.6
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 9.8e-08 62.8 146 35.6


User provided reference genes

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