Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 2280.8 1181 100.0
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 2238.0 1178 98.6
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 2003.4 1182 88.7
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1910.6 1173 86.0
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1860.9 1156 85.1
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1741.5 1177 79.8
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1436.8 1204 65.4
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1407.5 1172 65.3
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1388.6 1183 63.6
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1364.7 1043 65.9
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1355.5 1188 62.8
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1348.2 1186 62.2
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1337.4 1176 61.3
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1336.2 1171 60.8
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1334.7 1168 62.4
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1333.5 1040 65.0
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1309.7 1181 61.6
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1308.9 1171 61.4
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1306.6 1183 60.8
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1302.3 1167 62.1
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1300.0 1185 60.6
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1294.3 1176 59.9
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1293.1 1198 58.0
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1291.6 1182 60.0
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1281.2 1203 59.4
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1278.8 1180 60.5
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1278.5 1235 57.0
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1274.2 1177 59.2
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1270.8 1180 59.9
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1270.0 1276 54.7
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1265.4 1192 59.1
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1263.1 1182 59.4
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1261.1 1177 58.6
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1253.0 1172 59.4
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1253.0 1167 57.9
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1253.0 1182 58.1
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1252.3 1185 56.8
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1249.6 1185 57.4
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1245.7 1182 59.0
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1245.3 1167 59.0
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1242.6 1181 57.9
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1241.5 1135 60.6
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1240.7 1183 57.8
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1240.3 1184 59.0
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1238.8 1181 57.8
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1238.8 1176 59.3
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1238.0 1174 59.0
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1231.5 1187 56.4
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1230.7 1164 57.0
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1226.5 1163 58.2
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1226.1 1182 58.2
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1216.1 1182 57.1
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1215.7 1185 56.8
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1204.9 1173 57.1
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1204.5 1171 58.0
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1198.0 1230 55.5
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 1196.8 1077 63.2
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1192.9 1176 56.3
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1191.0 948 64.2
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1188.7 1189 55.3
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1181.0 1178 56.3
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1167.5 1097 59.0
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1165.2 1190 54.3
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1157.5 1128 56.3
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1153.7 1167 53.5
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1151.3 1210 55.0
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1146.3 1162 54.7
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1143.6 1351 51.4
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1139.4 1161 52.9
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1133.2 1163 55.7
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1133.2 1163 55.7
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1120.9 1156 54.5
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1111.3 1157 53.4
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1110.9 1163 54.1
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1108.2 1655 42.8
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1107.8 1148 54.3
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1094.0 1157 52.9
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1083.9 996 58.1
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1081.2 1172 52.2
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1078.2 1149 54.1
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 2.4e-306 1055.8 1165 51.2
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 5.4e-306 1054.7 1167 50.9
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 5.2e-301 1038.1 1038 52.4
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 1.2e-292 1010.4 1185 47.4
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 1.0e-288 997.3 1163 48.2
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 3.1e-277 959.1 1256 46.0
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 2.5e-263 912.9 989 51.3
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 3.6e-246 855.9 1204 42.5
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 4.5e-244 849.0 720 58.9
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 7.1e-234 815.1 730 57.4
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.6e-222 777.3 865 52.8
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 2.0e-215 753.8 1052 43.8
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 3.6e-209 733.0 637 59.2
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.6e-196 691.0 677 55.7
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 4.5e-196 689.5 657 56.3
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 1.7e-190 671.0 785 50.3
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 1.6e-188 664.5 1192 39.4
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 7.2e-186 655.6 970 40.1
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 2.7e-180 637.1 672 53.0
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 6.4e-174 615.9 1037 36.5
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.1e-168 597.0 1211 35.9
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 7.3e-162 575.9 1197 35.5
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 8.9e-152 542.3 492 59.8
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 3.2e-133 480.7 1234 30.9
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 2.7e-108 397.9 429 52.9
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.3e-99 368.2 425 52.9
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 8.9e-59 233.4 179 63.1
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.9e-57 228.4 275 41.5
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 2.7e-31 142.1 120 56.7
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 1.6e-28 132.9 95 70.5
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 9.9e-26 123.6 280 30.4
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 4.2e-16 91.7 70 65.7
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 1.9e-13 82.8 95 44.2
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 1.3e-12 80.1 157 34.4
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 4.0e-11 75.1 81 50.6
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 1.2e-10 73.6 60 63.3
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 2.2e-09 69.3 48 66.7
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.9e-08 66.2 36 75.0
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 2.5e-08 65.9 36 83.3
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 3.5e-07 62.0 36 75.0
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 4.6e-07 61.6 42 66.7
Medtr6g074790 Medicago truncatula HOM05D006302 ORTHO05D007960 8.7e-06 57.4 46 65.2


User provided reference genes

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