Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 0.0e+00 1362.8 694 100.0
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 0.0e+00 1343.2 694 98.3
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 4.7e-312 1074.7 694 80.5
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 5.2e-309 1063.9 692 78.8
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 1.2e-308 1062.8 696 79.3
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 3.7e-307 1057.7 734 75.5
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 7.8e-265 917.1 492 95.7
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 2.0e-215 753.1 698 55.4
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 4.4e-215 751.9 698 55.0
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 7.0e-213 744.6 702 56.3
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 1.3e-211 740.3 700 55.7
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 7.2e-210 734.6 699 55.7
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 9.4e-210 734.2 694 54.6
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 9.4e-210 734.2 703 54.3
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.6e-209 733.4 695 56.7
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 8.0e-209 731.1 706 54.1
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 7.5e-207 724.5 693 54.4
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 2.2e-206 723.0 693 54.4
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 5.3e-205 718.4 704 55.0
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 7.7e-204 714.5 705 54.9
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.5e-202 710.3 693 54.7
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 2.5e-202 709.5 720 54.6
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 7.2e-202 708.0 681 53.7
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 3.6e-201 705.7 693 54.1
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 8.0e-201 704.5 695 52.7
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.5e-199 700.3 691 53.4
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 2.6e-199 699.5 719 53.7
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 1.7e-198 696.8 700 51.3
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 3.7e-198 695.7 693 51.9
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 3.8e-195 685.6 703 51.8
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 6.5e-195 684.9 667 55.5
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 2.5e-194 682.9 750 50.1
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 9.5e-194 681.0 690 51.4
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 2.8e-193 679.5 699 51.8
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 2.3e-192 676.4 694 51.3
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 2.6e-191 672.9 708 51.3
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 4.4e-191 672.2 691 51.8
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 4.4e-191 672.2 698 51.7
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 5.7e-191 671.8 700 50.1
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 9.8e-191 671.0 693 50.8
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 9.8e-191 671.0 694 52.3
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 1.3e-190 670.6 692 51.4
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 1.3e-190 670.6 693 53.0
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 4.9e-190 668.7 703 51.6
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 1.8e-189 666.8 696 52.0
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 5.4e-189 665.2 696 51.0
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 2.7e-188 662.9 703 51.9
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 3.5e-188 662.5 694 50.3
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.7e-187 660.2 695 50.6
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 5.0e-187 658.7 697 50.1
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.5e-186 657.1 696 51.1
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 6.8e-184 648.3 690 50.0
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 5.9e-180 635.2 700 49.0
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 1.0e-179 634.4 583 58.3
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 2.3e-179 633.3 697 49.5
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 9.5e-178 627.9 696 48.4
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 2.8e-177 626.3 695 49.2
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 2.3e-176 623.2 693 48.8
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.1e-176 622.9 651 52.2
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 6.4e-174 615.1 609 53.2
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 9.2e-173 611.3 702 47.6
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 1.2e-172 610.9 514 58.9
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 2.0e-172 610.1 698 48.1
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 7.8e-172 608.2 703 47.8
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 4.7e-169 599.0 689 48.0
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 6.8e-168 595.1 704 46.2
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 1.2e-167 594.3 603 50.1
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 2.9e-166 589.7 692 46.1
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 3.7e-166 589.3 704 46.0
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 4.9e-166 589.0 518 56.8
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 2.1e-164 583.6 695 46.9
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.0e-163 581.3 674 47.5
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 2.5e-162 576.6 673 47.3
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 2.4e-160 570.1 674 46.4
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 4.0e-160 569.3 700 45.9
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 5.4e-157 558.9 605 50.9
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 5.8e-151 538.9 695 44.5
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 4.9e-150 535.8 460 58.3
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 4.6e-148 529.3 510 51.6
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 1.9e-146 523.9 530 55.1
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 1.4e-144 517.7 606 47.5
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 1.8e-139 500.7 446 55.8
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 3.7e-137 493.0 446 56.1
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 4.8e-137 492.7 403 59.1
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 4.9e-126 456.1 552 45.8
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 1.2e-124 451.4 443 53.7
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 3.5e-124 449.9 632 44.1
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 3.7e-121 439.9 464 50.9
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 9.1e-112 408.7 534 44.6
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.0e-103 380.9 425 49.6
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 1.2e-100 371.7 538 40.7
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 2.7e-100 370.5 494 41.9
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.2e-95 355.1 658 36.0
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 1.3e-89 335.1 768 30.7
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 2.0e-87 327.8 838 31.5
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 6.1e-84 316.2 374 48.4
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 2.6e-82 310.8 692 32.5
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 3.4e-82 310.5 692 32.4
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.1e-80 303.9 232 63.4
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 6.8e-75 286.2 848 28.5
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 6.6e-70 269.6 585 32.1
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.3e-65 255.4 694 31.4
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 8.3e-65 252.7 207 60.4
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 8.3e-65 252.7 405 39.5
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 2.8e-60 237.7 186 62.4
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 7.1e-40 169.9 318 37.7
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.0e-38 166.0 159 48.4
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 5.6e-37 160.2 146 55.5
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 1.5e-34 152.1 131 54.2
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 1.7e-30 138.7 205 39.5
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 6.6e-30 136.7 210 41.9
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 6.6e-30 136.7 308 30.8
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 2.1e-28 131.7 144 53.5
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 4.8e-28 130.6 89 64.0
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 5.3e-27 127.1 237 38.4
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 1.5e-26 125.6 204 38.7
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.1e-21 109.4 247 33.2
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 4.3e-21 107.5 69 75.4
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 5.6e-21 107.1 106 52.8
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.6e-15 89.0 59 66.1
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 7.4e-13 80.1 101 45.5
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 1.3e-12 79.3 43 72.1
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.3e-12 79.3 76 55.3
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 3.8e-09 67.8 67 52.2
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 2.5e-08 65.1 47 61.7
CAN.G261.16 Capsicum annuum HOM05D000222 ORTHO05D000001 5.5e-08 63.9 195 32.3
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 5.5e-08 63.9 127 34.6
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.1e-07 62.0 71 47.9
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 1.0e-06 59.7 426 22.1
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 1.0e-06 59.7 313 23.3
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 5.1e-06 57.4 142 31.0


User provided reference genes

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