Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 3.3e-169 598.6 367 100.0
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 3.3e-169 598.6 367 100.0
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 7.3e-161 570.9 370 96.2
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 4.0e-151 538.5 330 88.8
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 4.1e-148 528.5 326 89.6
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 7.6e-134 481.1 326 84.4
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 5.4e-132 474.9 255 94.1
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 1.0e-106 391.0 328 70.1
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 1.1e-105 387.5 328 64.9
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 4.3e-105 385.6 337 67.7
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 5.7e-105 385.2 330 68.8
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 1.3e-104 384.0 327 69.4
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 1.3e-104 384.0 327 67.9
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 4.8e-104 382.1 338 68.3
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 1.4e-103 380.6 248 76.2
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 4.5e-102 375.6 331 66.2
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.3e-101 374.0 325 67.1
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.7e-101 373.6 333 66.7
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.7e-101 373.6 335 66.0
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.7e-101 373.6 327 64.2
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.2e-101 373.2 325 67.1
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 3.8e-101 372.5 334 63.8
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 8.5e-101 371.3 347 64.0
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 1.9e-100 370.2 340 63.8
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 7.2e-100 368.2 245 75.9
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 2.1e-99 366.7 325 64.9
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 3.6e-99 365.9 335 63.0
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 3.6e-99 365.9 330 65.2
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 6.1e-99 365.2 325 66.5
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 7.9e-99 364.8 330 65.5
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.0e-98 364.4 338 62.7
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.4e-98 364.0 328 66.2
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 6.7e-98 361.7 325 65.8
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 6.7e-98 361.7 326 62.3
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 6.7e-98 361.7 326 62.3
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 6.7e-98 361.7 325 65.5
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 6.7e-98 361.7 327 64.2
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 8.8e-98 361.3 326 66.3
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.5e-97 360.5 331 61.6
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 2.0e-97 360.1 327 66.4
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.6e-97 359.8 329 62.9
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 2.6e-97 359.8 326 65.0
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 3.3e-97 359.4 369 59.3
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 7.4e-97 358.2 332 63.0
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 9.7e-97 357.8 328 63.4
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 9.7e-97 357.8 331 65.6
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.3e-96 357.5 326 63.2
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.2e-96 356.7 248 73.4
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 3.7e-96 355.9 332 62.7
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 4.8e-96 355.5 328 61.3
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 4.8e-96 355.5 248 72.2
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 6.3e-96 355.1 333 64.6
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.1e-95 354.4 332 65.1
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.8e-95 353.6 337 60.8
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 6.9e-95 351.7 330 63.3
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 2.0e-94 350.1 325 61.8
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 3.4e-94 349.4 329 62.9
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 7.7e-94 348.2 325 60.6
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 5.0e-93 345.5 248 70.6
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 5.0e-93 345.5 248 70.6
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 6.5e-93 345.1 257 69.6
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 8.5e-93 344.7 329 65.0
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.1e-92 344.4 326 64.4
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.4e-92 344.0 327 65.4
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 1.4e-92 344.0 328 64.3
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 5.5e-92 342.0 325 63.7
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 9.4e-92 341.3 341 63.0
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 2.1e-91 340.1 253 71.9
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.4e-90 337.4 332 57.5
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 1.1e-89 334.3 325 60.3
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 3.3e-89 332.8 337 59.3
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.7e-89 332.0 248 69.4
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 2.8e-88 329.7 326 62.0
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 8.2e-88 328.2 241 67.6
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 2.4e-87 326.6 326 62.0
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 3.1e-87 326.2 343 60.6
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 5.3e-87 325.5 349 59.9
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.6e-86 323.9 326 61.0
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.6e-86 323.9 242 68.6
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 4.5e-86 322.4 326 62.0
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 5.9e-86 322.0 241 70.5
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 7.7e-86 321.6 328 59.1
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 1.3e-85 320.9 326 62.0
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 1.7e-85 320.5 327 58.1
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 5.0e-85 318.9 287 60.3
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.1e-84 317.8 327 60.9
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 9.4e-84 314.7 216 73.6
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 4.7e-83 312.4 327 61.5
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 5.2e-82 308.9 333 58.6
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 2.0e-81 307.0 249 64.7
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 2.9e-77 293.1 227 68.7
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 2.9e-77 293.1 327 58.1
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 1.5e-76 290.8 246 66.7
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.6e-75 287.3 215 69.3
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.7e-75 286.6 241 63.9
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 3.6e-75 286.2 283 54.8
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 2.0e-73 280.4 214 70.1
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 1.3e-72 277.7 330 51.2
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.8e-72 276.6 366 49.5
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 8.3e-72 275.0 330 50.6
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.1e-71 274.6 257 56.4
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 2.4e-71 273.5 218 66.5
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 4.1e-71 272.7 402 50.0
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 5.4e-71 272.3 231 66.7
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 7.0e-71 271.9 290 57.2
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.2e-70 271.2 334 54.8
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.9e-69 266.5 253 56.5
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 7.2e-68 261.9 339 51.3
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 6.1e-67 258.8 327 49.2
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 4.4e-65 252.7 328 50.6
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 3.7e-64 249.6 338 51.8
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 4.9e-64 249.2 206 64.6
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.4e-63 247.7 351 49.0
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 1.8e-63 247.3 338 54.1
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 7.0e-63 245.4 330 47.3
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.6e-62 244.2 335 54.9
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 3.5e-62 243.0 255 55.7
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 3.5e-62 243.0 255 55.7
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 3.8e-61 239.6 218 64.7
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 8.6e-61 238.4 189 66.1
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 2.8e-59 233.4 258 53.9
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 2.8e-59 233.4 258 53.9
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 6.1e-59 232.3 258 53.9
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 2.3e-53 213.8 250 52.0
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.9e-48 196.1 213 61.0
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 1.4e-47 194.5 264 43.9
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 4.4e-41 172.9 134 69.4
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 3.2e-39 166.8 153 64.1
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.2e-35 154.8 101 75.2
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 8.9e-34 148.7 221 46.6
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 3.9e-29 133.3 128 58.6
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 8.1e-27 125.6 154 40.9
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 7.6e-25 119.0 148 42.6
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 1.9e-23 114.4 132 41.7
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 3.3e-20 103.6 114 57.9
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 2.1e-19 100.9 129 41.1
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.8e-19 100.5 114 44.7
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 4.8e-19 99.8 172 34.9
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.4e-17 93.6 126 40.5
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 4.5e-17 93.2 117 62.4
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 5.8e-17 92.8 111 55.0
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 9.9e-17 92.0 112 50.0
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.7e-14 84.0 113 61.9
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 9.6e-12 75.5 133 45.9
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 2.1e-11 74.3 115 55.7
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.1e-10 72.0 48 64.6
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 1.4e-10 71.6 145 47.6
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 7.6e-09 65.9 123 39.0
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 3.8e-08 63.5 36 80.6


User provided reference genes

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