Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 2.3e-53 211.8 98 100.0
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.9e-52 208.8 98 98.0
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.9e-52 208.8 98 98.0
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 2.9e-48 194.9 98 93.9
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.7e-40 169.1 98 82.7
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.8e-40 167.9 98 81.6
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 2.5e-39 165.2 98 76.5
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.2e-38 162.9 84 84.5
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.4e-37 159.5 78 85.9
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.4e-37 159.5 83 78.3
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 2.3e-37 158.7 81 85.2
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.0e-37 158.3 78 84.6
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 3.9e-37 157.9 78 85.9
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 5.1e-37 157.5 96 71.9
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 6.7e-37 157.1 81 84.0
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 8.8e-37 156.8 82 81.7
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.5e-36 156.0 98 69.4
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 1.5e-36 156.0 83 75.9
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 2.0e-36 155.6 91 75.8
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 2.5e-36 155.2 80 81.2
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 3.3e-36 154.8 88 75.0
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 3.3e-36 154.8 79 83.5
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 5.7e-36 154.1 82 76.8
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 5.7e-36 154.1 82 76.8
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 5.7e-36 154.1 89 75.3
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 5.7e-36 154.1 87 74.7
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 7.4e-36 153.7 78 80.8
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.3e-35 152.9 80 81.2
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.7e-35 152.5 77 83.1
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 1.7e-35 152.5 82 78.0
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 2.2e-35 152.1 78 83.3
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 2.8e-35 151.8 85 76.5
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 3.7e-35 151.4 88 73.9
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 3.7e-35 151.4 78 83.3
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 3.7e-35 151.4 78 83.3
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 4.8e-35 151.0 96 69.8
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.8e-35 151.0 83 74.7
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 4.8e-35 151.0 84 75.0
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 6.3e-35 150.6 83 75.9
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 6.3e-35 150.6 85 76.5
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 8.2e-35 150.2 78 80.8
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 1.4e-34 149.4 81 76.5
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 1.4e-34 149.4 80 80.0
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.4e-34 149.4 87 73.6
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.8e-34 149.1 78 80.8
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.8e-34 149.1 78 80.8
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 3.1e-34 148.3 75 81.3
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 4.1e-34 147.9 76 81.6
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 5.3e-34 147.5 87 72.4
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 6.9e-34 147.1 78 78.2
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 9.1e-34 146.7 91 71.4
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 9.1e-34 146.7 81 74.1
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 1.2e-33 146.4 79 77.2
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 1.2e-33 146.4 81 74.1
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 1.5e-33 146.0 79 77.2
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.5e-33 146.0 87 72.4
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 2.0e-33 145.6 88 71.6
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 2.0e-33 145.6 80 75.0
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 2.6e-33 145.2 81 75.3
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 3.4e-33 144.8 77 77.9
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 4.5e-33 144.4 80 75.0
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 5.9e-33 144.1 80 75.0
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 5.9e-33 144.1 80 75.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 5.9e-33 144.1 90 71.1
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 5.9e-33 144.1 77 79.2
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.0e-32 143.3 94 68.1
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 1.3e-32 142.9 80 75.0
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.3e-32 142.9 82 76.8
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.3e-32 142.9 87 72.4
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 1.7e-32 142.5 77 77.9
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 1.7e-32 142.5 87 71.3
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 3.8e-32 141.4 77 75.3
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 6.5e-32 140.6 78 76.9
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.5e-31 138.7 77 74.0
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 3.2e-31 138.3 92 66.3
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 3.6e-30 134.8 76 72.4
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 7.9e-30 133.7 92 64.1
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 8.8e-29 130.2 138 47.8
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 4.5e-25 117.9 138 45.7
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 8.8e-21 103.6 77 62.3
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 1.4e-18 96.3 83 55.4
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 5.3e-18 94.4 42 92.9
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.0e-17 92.4 43 88.4
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 4.5e-17 91.3 186 31.2
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 8.5e-16 87.0 41 87.8
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 3.2e-15 85.1 41 85.4
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 9.4e-15 83.6 42 81.0
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 5.7e-12 74.3 42 71.4
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.7e-11 71.6 43 67.4
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 3.7e-11 71.6 42 64.3
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 2.4e-10 68.9 53 58.5
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 5.4e-10 67.8 32 87.5
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.2e-09 66.6 46 58.7
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 2.7e-09 65.5 50 62.0
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 39.2
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 39.2
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.7e-08 62.8 79 38.0
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.7e-08 62.8 79 39.2
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 2.2e-08 62.4 79 36.7
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 2.2e-08 62.4 92 38.0
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 2.9e-08 62.0 86 34.9
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 3.8e-08 61.6 79 36.7
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 5.0e-08 61.2 79 39.2
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 6.5e-08 60.8 79 36.7
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 6.5e-08 60.8 79 38.0
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 8.5e-08 60.5 83 36.1
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 8.5e-08 60.5 96 35.4
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 38.0
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 36.7
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 36.7
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 36.7
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.5e-07 59.7 93 35.5
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 1.5e-07 59.7 87 34.5
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.5e-07 59.7 79 38.0
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.5e-07 59.7 79 38.0
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.9e-07 59.3 77 37.7
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.9e-07 59.3 79 35.4
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 1.9e-07 59.3 90 34.4
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 2.5e-07 58.9 98 31.6
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 2.5e-07 58.9 87 35.6
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 2.5e-07 58.9 79 35.4
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 2.5e-07 58.9 79 36.7
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 3.2e-07 58.5 83 34.9
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 36.7
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 36.7
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 3.2e-07 58.5 99 33.3
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 3.2e-07 58.5 84 36.9
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 35.4
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 35.4
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 4.2e-07 58.2 79 35.4
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 4.2e-07 58.2 92 33.7
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 5.5e-07 57.8 99 33.3
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.5e-07 57.8 79 35.4
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 5.5e-07 57.8 77 36.4
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 5.5e-07 57.8 87 34.5
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 7.2e-07 57.4 77 33.8
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 7.2e-07 57.4 79 35.4
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 7.2e-07 57.4 83 34.9
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 7.2e-07 57.4 90 33.3
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 9.4e-07 57.0 84 34.5
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 9.4e-07 57.0 79 35.4
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 9.4e-07 57.0 79 35.4
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 1.2e-06 56.6 79 36.7
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.2e-06 56.6 79 34.2
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.2e-06 56.6 90 33.3
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.6e-06 56.2 84 34.5
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.6e-06 56.2 84 34.5
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.6e-06 56.2 84 34.5
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.6e-06 56.2 84 34.5
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 1.6e-06 56.2 84 34.5
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 1.6e-06 56.2 79 35.4
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 1.6e-06 56.2 97 32.0
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.6e-06 56.2 98 32.7
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 1.6e-06 56.2 79 34.2
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 2.7e-06 55.5 79 34.2
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 2.7e-06 55.5 79 34.2
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 3.6e-06 55.1 83 33.7
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 4.7e-06 54.7 79 32.9
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 4.7e-06 54.7 89 31.5
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 4.7e-06 54.7 83 34.9
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 6.1e-06 54.3 83 33.7


User provided reference genes

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