Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 5.5e-181 637.5 320 100.0
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 1.7e-174 615.9 320 95.6
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.5e-165 586.3 320 89.7
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 2.8e-156 555.4 305 86.9
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.5e-151 538.5 311 85.2
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 1.1e-147 526.9 320 80.9
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 9.0e-123 444.1 323 67.5
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 2.6e-122 442.6 338 68.0
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 2.6e-122 442.6 323 68.4
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 5.4e-120 434.9 323 66.6
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 6.0e-119 431.4 323 64.4
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.5e-117 426.8 324 65.4
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.9e-117 426.4 323 64.1
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 3.3e-117 425.6 323 66.3
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.3e-117 425.2 323 65.3
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.6e-116 423.3 323 65.0
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 6.2e-116 421.4 306 66.7
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 8.1e-116 421.0 325 63.4
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.4e-115 419.5 323 65.3
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 3.1e-115 419.1 323 65.3
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 4.0e-115 418.7 324 66.4
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 2.6e-114 416.0 363 57.6
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 2.6e-114 416.0 324 63.6
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 3.4e-114 415.6 323 64.1
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.8e-114 414.8 323 64.1
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 7.6e-114 414.5 323 63.2
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 9.9e-114 414.1 317 66.2
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.7e-113 413.3 330 64.2
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 2.2e-113 412.9 323 62.5
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 8.4e-113 411.0 323 67.2
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.1e-112 410.6 323 64.1
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 2.4e-112 409.5 326 65.0
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.4e-112 409.5 322 64.3
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 5.5e-112 408.3 324 63.0
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 5.5e-112 408.3 328 62.5
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 9.3e-112 407.5 324 62.0
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.2e-111 407.1 324 63.6
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 3.5e-111 405.6 324 61.7
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 4.6e-111 405.2 323 63.2
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 6.0e-111 404.8 306 65.0
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 6.0e-111 404.8 324 63.3
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 6.0e-111 404.8 323 61.9
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.8e-110 403.3 324 63.3
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.8e-110 403.3 324 62.0
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.8e-110 403.3 326 61.7
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 2.3e-110 402.9 321 61.1
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.0e-110 402.5 324 62.3
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.0e-110 402.5 324 62.3
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 5.1e-110 401.7 306 64.4
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 1.5e-109 400.2 379 55.4
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 7.4e-109 397.9 325 62.2
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 8.1e-108 394.4 323 60.1
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.4e-107 393.7 327 62.7
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 1.4e-107 393.7 325 61.5
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.4e-107 393.7 323 60.7
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.4e-107 392.9 326 62.3
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 3.1e-107 392.5 392 53.6
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 4.0e-107 392.1 319 60.8
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 6.9e-107 391.3 326 61.3
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 9.0e-107 391.0 325 61.8
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 7.6e-106 387.9 323 60.4
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.0e-105 387.5 323 60.1
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.0e-105 387.5 323 60.7
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 2.2e-105 386.3 325 62.5
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 3.8e-105 385.6 323 59.8
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 2.5e-104 382.9 323 60.7
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.5e-104 381.7 338 58.6
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.2e-103 380.6 323 60.1
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 2.1e-103 379.8 327 61.5
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 4.6e-103 378.6 341 57.8
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 6.0e-103 378.3 323 59.4
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 6.0e-103 378.3 325 58.8
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 7.9e-103 377.9 324 59.9
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 1.3e-102 377.1 315 60.3
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 1.3e-102 377.1 323 56.7
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.3e-102 377.1 323 58.5
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 2.3e-102 376.3 300 62.7
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 3.9e-102 375.6 323 56.7
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 6.7e-102 374.8 313 61.0
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 8.7e-102 374.4 323 58.8
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 1.5e-101 373.6 362 57.5
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.9e-101 373.2 326 61.3
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.5e-101 372.9 282 64.2
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 2.5e-101 372.9 324 59.3
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.5e-101 372.9 326 61.7
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.6e-100 370.2 324 59.6
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.1e-99 367.5 319 57.4
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 1.1e-99 367.5 324 59.9
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 3.1e-99 365.9 326 59.8
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 6.9e-99 364.8 323 57.9
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.3e-97 360.5 320 58.1
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 2.2e-97 359.8 308 60.1
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.9e-97 359.4 268 67.2
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 3.8e-97 359.0 323 57.3
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.9e-96 356.7 333 55.6
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 2.5e-96 356.3 324 55.9
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 7.2e-96 354.8 360 53.1
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.6e-95 353.6 333 55.3
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 1.8e-94 350.1 324 55.9
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 1.8e-94 350.1 324 55.9
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 3.0e-94 349.4 250 67.6
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 1.5e-93 347.1 349 52.1
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 3.7e-92 342.4 359 51.5
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 6.3e-92 341.7 346 53.2
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 6.5e-89 331.6 368 49.7
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.5e-88 329.7 285 60.7
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 9.4e-88 327.8 325 54.8
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 4.4e-85 318.9 362 47.8
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 6.3e-84 315.1 322 52.5
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 1.1e-83 314.3 329 50.2
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 5.3e-83 312.0 323 48.9
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 7.7e-82 308.1 324 49.7
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 5.5e-80 302.0 234 62.0
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 9.4e-80 301.2 221 65.2
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.2e-78 295.4 306 53.3
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.4e-75 287.3 145 99.3
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 4.2e-72 275.8 210 65.2
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 7.2e-72 275.0 309 50.8
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 3.0e-70 269.6 261 53.3
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.5e-69 267.3 292 50.3
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.4e-67 260.0 307 48.5
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 5.0e-65 252.3 210 61.9
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 8.5e-65 251.5 274 50.7
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 4.2e-64 249.2 310 42.6
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.0e-62 244.6 171 69.0
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 6.8e-62 241.9 247 49.8
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.2e-61 241.1 322 44.7
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.1e-59 233.0 328 44.2
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.2e-58 231.1 117 99.1
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 7.7e-58 228.4 145 77.2
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.7e-52 209.5 164 67.1
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 4.9e-52 209.1 164 61.6
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 8.3e-52 208.4 172 59.9
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 4.7e-47 192.6 153 62.7
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.4e-43 180.3 256 42.6
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.5e-40 171.0 151 55.6
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 3.6e-39 166.4 301 36.5
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 1.2e-37 161.4 163 50.3
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 4.4e-37 159.5 127 60.6
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 6.6e-33 145.6 218 33.9
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.1e-32 144.8 303 31.7
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 6.8e-30 135.6 213 31.5
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 3.7e-28 129.8 104 61.5
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.1e-27 128.3 302 31.1
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 1.5e-24 117.9 115 48.7
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 4.3e-24 116.3 111 55.0
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.1e-22 110.2 120 51.7
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 2.3e-17 94.0 110 42.7
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 5.1e-17 92.8 86 57.0
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.3e-16 90.1 81 51.9
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 1.2e-13 81.6 61 70.5
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.5e-13 81.3 96 46.9
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 1.3e-12 78.2 74 51.4
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 2.9e-12 77.0 74 51.4
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 2.9e-12 77.0 74 51.4
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 1.1e-11 75.1 59 67.8
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.4e-11 74.7 78 48.7
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 1.0e-09 68.6 61 60.7
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 2.4e-06 57.4 62 48.4


User provided reference genes

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