Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 1.8e-59 232.6 137 100.0
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 3.4e-55 218.4 130 98.5
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 4.5e-47 191.4 130 88.5
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 5.7e-42 174.5 108 87.0
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 4.1e-40 168.3 127 74.0
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 3.8e-38 161.8 130 73.1
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 2.2e-33 146.0 130 72.3
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 3.1e-32 142.1 130 62.3
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 5.3e-32 141.4 130 61.5
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 9.1e-32 140.6 130 62.3
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 2.0e-31 139.4 107 72.9
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 1.9e-29 132.9 130 63.1
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 2.5e-29 132.5 108 71.3
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 3.2e-29 132.1 130 61.5
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 1.2e-28 130.2 129 58.9
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 1.2e-28 130.2 129 58.9
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 1.6e-28 129.8 155 56.8
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 2.7e-28 129.0 137 60.6
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 6.1e-28 127.9 130 58.5
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 6.1e-28 127.9 130 59.2
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 2.3e-27 125.9 133 57.9
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 2.3e-27 125.9 108 68.5
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 3.0e-27 125.6 130 62.3
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 3.9e-27 125.2 127 59.1
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 6.7e-27 124.4 131 59.5
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 8.8e-27 124.0 135 63.0
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 1.1e-26 123.6 130 60.0
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 1.5e-26 123.2 131 61.1
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 2.0e-26 122.9 135 63.7
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 2.0e-26 122.9 128 58.6
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 3.3e-26 122.1 131 57.3
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 4.4e-26 121.7 128 58.6
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 5.7e-26 121.3 130 56.9
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 5.7e-26 121.3 129 53.5
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 7.4e-26 120.9 134 57.5
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 9.7e-26 120.6 134 57.5
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 9.7e-26 120.6 130 56.9
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 1.3e-25 120.2 130 57.7
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 1.3e-25 120.2 130 57.7
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 1.3e-25 120.2 134 57.5
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 2.2e-25 119.4 133 59.4
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 2.2e-25 119.4 130 53.8
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 2.2e-25 119.4 130 57.7
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 2.2e-25 119.4 108 63.9
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 4.8e-25 118.2 130 58.5
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 6.3e-25 117.9 131 58.8
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 8.2e-25 117.5 132 55.3
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 1.1e-24 117.1 132 59.1
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 1.1e-24 117.1 130 56.9
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 4.1e-24 115.2 139 55.4
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 5.3e-24 114.8 114 62.3
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 7.0e-24 114.4 139 54.0
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 9.1e-24 114.0 133 56.4
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 9.1e-24 114.0 130 62.3
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 1.2e-23 113.6 101 63.4
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 1.2e-23 113.6 139 54.7
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 1.2e-23 113.6 131 54.2
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 1.6e-23 113.2 108 61.1
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 2.0e-23 112.8 131 57.3
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 2.0e-23 112.8 108 60.2
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 2.0e-23 112.8 130 57.7
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 2.0e-23 112.8 159 47.2
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 2.6e-23 112.5 134 53.7
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 2.6e-23 112.5 130 60.8
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 2.6e-23 112.5 128 54.7
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 3.5e-23 112.1 131 56.5
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 4.5e-23 111.7 132 60.6
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 4.5e-23 111.7 101 65.3
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 1.3e-22 110.2 131 55.0
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 1.7e-22 109.8 130 59.2
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 2.2e-22 109.4 123 55.3
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 2.2e-22 109.4 116 59.5
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 2.9e-22 109.0 131 52.7
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 2.9e-22 109.0 130 50.8
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 3.8e-22 108.6 130 50.8
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 3.8e-22 108.6 133 54.1
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 5.0e-22 108.2 130 50.0
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 5.0e-22 108.2 130 50.8
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 5.0e-22 108.2 130 50.0
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 6.5e-22 107.8 133 54.1
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 8.5e-22 107.5 130 50.0
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 8.5e-22 107.5 79 73.4
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 1.1e-21 107.1 80 71.2
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 1.1e-21 107.1 80 71.2
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 2.5e-21 105.9 130 55.4
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 2.5e-21 105.9 130 55.4
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 5.5e-21 104.8 133 51.9
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 7.2e-21 104.4 133 51.9
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 7.2e-21 104.4 130 49.2
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 7.2e-21 104.4 130 49.2
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 7.2e-21 104.4 130 49.2
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 1.2e-20 103.6 94 61.7
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 1.2e-20 103.6 131 56.5
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 2.1e-20 102.8 79 68.4
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 2.1e-20 102.8 79 68.4
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 4.7e-20 101.7 132 52.3
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 1.8e-19 99.8 130 53.8
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 3.4e-18 95.5 140 52.1
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 4.4e-18 95.1 134 48.5
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 4.4e-18 95.1 82 63.4
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 7.5e-18 94.4 130 48.5
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 1.7e-17 93.2 130 52.3
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 2.8e-17 92.4 130 52.3
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 6.3e-17 91.3 132 45.5
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 3.8e-14 82.0 70 58.6
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 5.0e-14 81.6 136 41.9
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 5.5e-13 78.2 108 46.3
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 5.2e-11 71.6 79 53.2
Pp3c4_15620 Physcomitrium patens HOM05D007045 ORTHO05D008872 5.9e-07 58.2 96 43.8
Pp3c13_5290 Physcomitrium patens HOM05D007045 ORTHO05D008872 7.7e-07 57.8 117 39.3


User provided reference genes

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