Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.2e-46 188.0 116 100.0
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 2.5e-43 178.7 119 95.0
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.2e-38 161.8 119 89.1
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.5e-32 141.7 119 79.8
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.0e-31 140.2 119 79.8
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 1.0e-31 140.2 120 70.0
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.0e-31 140.2 119 79.8
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.9e-30 136.0 112 82.1
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.9e-30 136.0 112 80.4
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 9.4e-30 133.7 119 71.4
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 9.4e-30 133.7 112 79.5
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 1.1e-27 126.7 119 66.4
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.3e-27 125.2 119 70.6
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.3e-26 123.2 116 71.6
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 2.8e-26 122.1 101 71.3
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.8e-26 122.1 119 64.7
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 8.2e-26 120.6 108 75.9
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 1.4e-25 119.8 120 71.7
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 3.1e-25 118.6 111 72.1
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.5e-24 114.8 109 66.1
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 1.0e-23 113.6 119 66.4
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 5.0e-23 111.3 123 57.7
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-22 109.8 112 59.8
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 7.2e-22 107.5 107 62.6
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 8.0e-21 104.0 119 56.3
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 1.0e-20 103.6 108 67.6
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 2.3e-20 102.4 113 60.2
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 6.8e-20 100.9 113 60.2
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 8.8e-20 100.5 118 62.7
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.5e-19 99.8 110 66.4
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 2.6e-19 99.0 112 58.0
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 9.7e-19 97.1 114 66.7
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 6.3e-18 94.4 120 52.5
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 8.3e-18 94.0 111 55.0
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.4e-17 93.2 111 53.2
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 2.4e-17 92.4 88 63.6
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 3.1e-17 92.0 98 56.1
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 4.1e-17 91.7 112 51.8
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.3e-17 91.3 111 54.1
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 5.3e-17 91.3 98 54.1
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 5.3e-17 91.3 98 54.1
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 5.3e-17 91.3 88 64.8
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 5.3e-17 91.3 88 64.8
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 1.2e-16 90.1 92 59.8
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.2e-16 90.1 118 61.0
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 2.0e-16 89.4 109 55.0
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 5.9e-16 87.8 98 52.0
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 1.3e-15 86.7 91 62.6
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.3e-15 86.7 107 56.1
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.7e-15 86.3 118 55.9
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 2.9e-15 85.5 90 62.2
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 2.9e-15 85.5 61 77.0
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 3.8e-15 85.1 89 66.3
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 8.5e-15 84.0 89 55.1
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 8.5e-15 84.0 100 53.0
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 1.1e-14 83.6 83 61.4
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 1.1e-14 83.6 83 61.4
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 1.1e-14 83.6 89 59.6
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 1.1e-14 83.6 98 56.1
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.1e-14 83.6 98 57.1
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.5e-14 83.2 93 63.4
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.9e-14 82.8 90 53.3
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 2.5e-14 82.4 116 52.6
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 4.2e-14 81.6 79 63.3
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.2e-14 81.6 120 50.8
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 7.2e-14 80.9 118 46.6
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.2e-13 80.1 115 48.7
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 1.2e-13 80.1 89 56.2
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.6e-13 79.7 88 67.0
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 2.1e-13 79.3 61 73.8
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 2.1e-13 79.3 89 56.2
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.6e-13 78.6 88 69.3
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 6.1e-13 77.8 86 54.7
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 6.1e-13 77.8 79 59.5
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 6.1e-13 77.8 106 58.5
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 6.1e-13 77.8 91 53.8
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 6.1e-13 77.8 105 49.5
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 8.0e-13 77.4 88 68.2
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 1.4e-12 76.6 91 56.0
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.4e-12 76.6 88 68.2
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.4e-12 76.6 88 68.2
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 1.4e-12 76.6 83 57.8
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.8e-12 76.3 88 67.0
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 3.0e-12 75.5 80 57.5
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 5.2e-12 74.7 93 58.1
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 5.2e-12 74.7 94 51.1
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 5.2e-12 74.7 84 53.6
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 6.8e-12 74.3 51 80.4
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 6.8e-12 74.3 88 55.7
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 8.8e-12 73.9 99 60.6
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 8.8e-12 73.9 84 56.0
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 1.5e-11 73.2 111 46.8
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.0e-11 72.8 125 43.2
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 2.0e-11 72.8 75 70.7
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 2.0e-11 72.8 84 50.0
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 2.6e-11 72.4 107 55.1
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.6e-11 72.4 98 56.1
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.6e-11 72.4 98 56.1
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 2.6e-11 72.4 96 51.0
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 2.6e-11 72.4 92 53.3
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 3.4e-11 72.0 76 56.6
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 4.4e-11 71.6 99 59.6
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 5.7e-11 71.2 95 58.9
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 7.5e-11 70.9 84 51.2
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 7.5e-11 70.9 123 43.9
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 7.5e-11 70.9 81 54.3
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 7.5e-11 70.9 100 52.0
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 7.5e-11 70.9 80 53.8
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 9.8e-11 70.5 89 53.9
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 9.8e-11 70.5 117 57.3
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 9.8e-11 70.5 86 47.7
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.7e-10 69.7 88 48.9
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.7e-10 69.7 86 51.2
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.2e-10 69.3 103 57.3
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.2e-10 69.3 78 51.3
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.2e-10 69.3 83 53.0
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.8e-10 68.9 90 45.6
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 2.8e-10 68.9 92 53.3
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 2.8e-10 68.9 100 47.0
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 2.8e-10 68.9 83 53.0
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 2.8e-10 68.9 77 55.8
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 4.8e-10 68.2 75 57.3
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 8.3e-10 67.4 74 54.1
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 1.8e-09 66.2 84 51.2
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.8e-09 66.2 75 56.0
MBI12_g23072_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 7.0e-09 64.3 99 55.6
MBI12_g33141_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 7.0e-09 64.3 99 55.6
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 9.1e-09 63.9 80 52.5
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.0e-08 62.8 85 47.1
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 3.5e-08 62.0 73 67.1
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 5.9e-08 61.2 70 50.0
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 1.0e-07 60.5 101 55.4
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 1.0e-07 60.5 117 48.7
MBI12_g23073_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.7e-07 59.7 100 53.0
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 1.7e-07 59.7 99 42.4
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 2.9e-07 58.9 92 47.8
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 6.6e-07 57.8 68 52.9
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 6.6e-07 57.8 86 45.3
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.1e-06 57.0 93 45.2
Duzib205G0505 Durio zibethinus HOM05D003381 ORTHO05D003880 1.5e-06 56.6 93 52.7
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.9e-06 56.2 97 44.3
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 2.5e-06 55.8 88 42.0
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 3.3e-06 55.5 97 43.3
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 4.2e-06 55.1 107 43.0
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.5e-06 54.7 97 43.3
Duzib068G1330 Durio zibethinus HOM05D003381 ORTHO05D003880 5.5e-06 54.7 104 50.0
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 7.2e-06 54.3 82 47.6
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 7.2e-06 54.3 94 46.8
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 7.2e-06 54.3 84 45.2
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 7.2e-06 54.3 85 45.9
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 9.5e-06 53.9 95 44.2
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 9.5e-06 53.9 92 42.4


User provided reference genes

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