Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 6.5e-57 223.8 110 100.0
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.8e-31 138.7 87 74.7
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.1e-30 136.7 86 74.4
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 5.2e-30 134.4 86 72.1
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 2.0e-29 132.5 86 72.1
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 2.6e-29 132.1 92 67.4
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 2.6e-29 132.1 92 67.4
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.4e-29 131.7 92 68.5
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 3.4e-29 131.7 92 68.5
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 3.4e-29 131.7 92 68.5
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 7.5e-29 130.6 92 65.2
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.7e-28 129.4 92 63.0
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 2.2e-28 129.0 92 65.2
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 2.2e-28 129.0 92 65.2
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.2e-28 129.0 87 66.7
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 2.9e-28 128.6 92 64.1
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 2.9e-28 128.6 87 65.5
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 3.7e-28 128.3 92 63.0
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 4.9e-28 127.9 92 64.1
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 4.9e-28 127.9 92 63.0
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 6.4e-28 127.5 92 64.1
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 6.4e-28 127.5 78 74.4
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 8.3e-28 127.1 92 64.1
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 8.3e-28 127.1 86 67.4
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 8.3e-28 127.1 87 66.7
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 1.4e-27 126.3 86 66.3
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 1.9e-27 125.9 86 66.3
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 2.4e-27 125.6 92 62.0
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 2.4e-27 125.6 92 63.0
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 3.2e-27 125.2 92 63.0
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 4.1e-27 124.8 92 62.0
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 5.4e-27 124.4 86 65.1
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 7.1e-27 124.0 86 66.3
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 9.2e-27 123.6 86 62.8
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.2e-26 123.2 92 60.9
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.2e-26 123.2 86 65.1
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.6e-26 122.9 92 59.8
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 2.1e-26 122.5 86 64.0
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 2.1e-26 122.5 92 62.0
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 2.7e-26 122.1 92 60.9
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 2.7e-26 122.1 92 59.8
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 3.5e-26 121.7 92 60.9
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 3.5e-26 121.7 92 62.0
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 3.5e-26 121.7 92 62.0
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 3.5e-26 121.7 92 62.0
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 3.5e-26 121.7 92 62.0
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 3.5e-26 121.7 92 59.8
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 6.0e-26 120.9 86 64.0
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 7.8e-26 120.6 91 60.4
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 7.8e-26 120.6 86 64.0
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 1.0e-25 120.2 90 58.9
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.0e-25 120.2 90 60.0
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.0e-25 120.2 85 63.5
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 1.3e-25 119.8 92 58.7
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 1.3e-25 119.8 92 57.6
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 1.3e-25 119.8 92 59.8
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 1.3e-25 119.8 86 62.8
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.7e-25 119.4 86 61.6
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 1.7e-25 119.4 92 57.6
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.3e-25 119.0 92 59.8
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 3.0e-25 118.6 86 64.0
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 5.1e-25 117.9 92 56.5
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 5.1e-25 117.9 92 59.8
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 5.1e-25 117.9 92 58.7
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 5.1e-25 117.9 92 58.7
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 6.6e-25 117.5 92 56.5
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 6.6e-25 117.5 92 56.5
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 6.6e-25 117.5 92 57.6
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 6.6e-25 117.5 87 59.8
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 6.6e-25 117.5 87 59.8
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 8.6e-25 117.1 86 60.5
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 8.6e-25 117.1 92 59.8
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 8.6e-25 117.1 87 67.8
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.1e-24 116.7 83 65.1
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.1e-24 116.7 90 58.9
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.1e-24 116.7 90 58.9
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.1e-24 116.7 90 58.9
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.1e-24 116.7 90 58.9
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 1.9e-24 115.9 92 56.5
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 2.5e-24 115.5 92 57.6
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 2.5e-24 115.5 91 57.1
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 2.5e-24 115.5 86 61.6
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 3.3e-24 115.2 92 57.6
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 3.3e-24 115.2 92 55.4
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 3.3e-24 115.2 92 56.5
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 3.3e-24 115.2 86 61.6
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 4.3e-24 114.8 92 55.4
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 4.3e-24 114.8 86 59.3
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 4.3e-24 114.8 84 59.5
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 4.3e-24 114.8 92 56.5
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 5.6e-24 114.4 92 56.5
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.6e-24 114.4 86 59.3
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 5.6e-24 114.4 92 56.5
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 9.5e-24 113.6 92 55.4
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 1.2e-23 113.2 86 59.3
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 1.2e-23 113.2 86 59.3
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.6e-23 112.8 86 58.1
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 1.6e-23 112.8 86 58.1
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 2.1e-23 112.5 86 60.5
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 2.8e-23 112.1 92 55.4
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 1.4e-22 109.8 92 53.3
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.4e-22 109.0 92 54.3
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 5.2e-22 107.8 86 55.8
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 6.8e-22 107.5 91 52.7
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 8.9e-22 107.1 86 57.0
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.2e-21 106.7 90 53.3
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 2.0e-21 105.9 85 61.2
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 2.2e-20 102.4 92 51.1
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 3.8e-20 101.7 89 51.7
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 1.9e-19 99.4 92 51.1
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 2.4e-19 99.0 92 48.9
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 2.4e-19 99.0 92 48.9
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 3.2e-19 98.6 86 53.5
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 5.4e-19 97.8 92 50.0
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 1.2e-18 96.7 70 61.4
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 6.0e-18 94.4 92 47.8
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 3.0e-17 92.0 88 47.7
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 3.9e-17 91.7 112 42.0
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 3.9e-17 91.7 92 45.7
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.1e-16 90.1 92 45.7
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 1.1e-16 90.1 92 45.7
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 7.3e-16 87.4 86 46.5
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 2.1e-15 85.9 79 51.9
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.4e-14 83.2 87 43.7
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 2.4e-14 82.4 87 46.0
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.5e-13 79.7 92 42.4
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 1.5e-13 79.7 88 42.0
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 2.0e-13 79.3 80 46.2
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 4.4e-13 78.2 86 43.0
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 5.8e-13 77.8 97 42.3
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.8e-12 75.1 92 41.3
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 3.8e-12 75.1 92 41.3
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 3.8e-12 75.1 92 41.3
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 3.8e-12 75.1 92 41.3
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 3.8e-12 75.1 92 41.3
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 3.8e-12 75.1 92 41.3
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.8e-12 75.1 92 43.5
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 6.4e-12 74.3 92 41.3
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 1.9e-11 72.8 92 40.2
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 5.4e-11 71.2 73 43.8
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 5.4e-11 71.2 92 41.3
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 2.1e-10 69.3 92 39.1
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 2.1e-10 69.3 65 49.2
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 4.6e-10 68.2 92 38.0
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 1.1e-08 63.5 48 56.2


User provided reference genes

Program Settings