Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 2.2e-109 399.1 213 100.0
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 2.7e-107 392.1 213 98.6
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 1.5e-102 376.3 212 94.8
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 8.4e-85 317.4 205 82.9
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 8.7e-82 307.4 210 79.0
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 2.1e-80 302.8 210 77.1
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 1.0e-53 214.2 210 57.6
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 5.0e-53 211.8 212 59.0
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 5.0e-53 211.8 211 60.2
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 4.7e-51 205.3 199 62.3
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 6.1e-51 204.9 210 58.1
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 1.0e-50 204.1 196 59.2
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 1.0e-50 204.1 194 60.8
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 1.4e-50 203.8 211 56.9
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 4.0e-50 202.2 209 56.5
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 1.5e-49 200.3 211 55.0
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 3.3e-49 199.1 212 58.0
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 4.4e-49 198.7 196 57.7
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 5.7e-49 198.4 202 58.9
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 5.7e-49 198.4 209 56.5
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 7.5e-49 198.0 196 58.7
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 1.3e-48 197.2 213 56.8
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.3e-48 197.2 211 55.9
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 1.7e-48 196.8 209 56.9
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 1.7e-48 196.8 211 55.9
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 2.2e-48 196.4 211 57.3
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 2.8e-48 196.1 211 55.9
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 1.1e-47 194.1 211 57.3
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 1.4e-47 193.7 213 54.9
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 9.1e-47 191.0 201 56.2
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 1.6e-46 190.3 200 55.5
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 2.7e-46 189.5 202 54.5
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 7.7e-46 188.0 210 51.4
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 6.5e-45 184.9 213 53.5
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 2.5e-44 183.0 210 52.4
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 7.2e-44 181.4 215 54.4
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 7.2e-44 181.4 215 54.4
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 7.2e-44 181.4 204 53.9
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 9.4e-44 181.0 215 54.4
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.2e-43 180.6 215 54.4
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 4.7e-43 178.7 154 64.3
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 6.1e-43 178.3 202 55.0
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 6.1e-43 178.3 194 54.6
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 6.1e-43 178.3 204 53.9
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 8.0e-43 177.9 212 50.0
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.0e-42 177.6 213 53.5
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 1.8e-42 176.8 202 54.5
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 3.0e-42 176.0 212 49.1
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 4.0e-42 175.6 213 52.6
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 8.8e-42 174.5 197 54.3
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 2.6e-41 172.9 208 50.0
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 2.8e-40 169.5 204 53.4
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 3.7e-40 169.1 208 50.0
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 1.1e-39 167.5 212 50.0
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 1.1e-39 167.5 213 52.6
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 1.8e-39 166.8 202 52.0
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 2.4e-39 166.4 202 53.0
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 4.1e-39 165.6 209 48.8
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 5.4e-39 165.2 169 60.4
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 9.1e-39 164.5 205 56.1
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 1.6e-38 163.7 147 59.2
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 2.7e-38 162.9 104 77.9
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 2.7e-38 162.9 104 77.9
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 3.5e-38 162.5 210 49.0
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 5.9e-38 161.8 132 66.7
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 5.9e-38 161.8 211 46.0
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 7.7e-38 161.4 206 51.0
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 1.0e-37 161.0 210 49.5
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 2.2e-37 159.8 113 69.9
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 2.2e-37 159.8 214 48.6
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 5.0e-37 158.7 213 51.2
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 8.5e-37 157.9 154 56.5
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 5.5e-36 155.2 196 51.0
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 9.4e-36 154.5 114 69.3
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 9.4e-36 154.5 114 69.3
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 9.4e-36 154.5 114 69.3
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 9.4e-36 154.5 114 69.3
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 9.4e-36 154.5 151 58.3
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 1.2e-35 154.1 133 61.7
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 1.2e-35 154.1 148 58.1
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 1.6e-35 153.7 205 51.2
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 2.7e-35 152.9 193 50.8
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 3.6e-35 152.5 125 65.6
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 4.7e-35 152.1 149 57.0
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 4.7e-35 152.1 149 57.0
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 4.7e-35 152.1 166 53.0
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 6.1e-35 151.8 149 57.0
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 1.0e-34 151.0 151 56.3
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 1.0e-34 151.0 184 51.6
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 1.0e-34 151.0 113 69.0
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 2.3e-34 149.8 166 53.0
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 4.0e-34 149.1 161 53.4
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 1.5e-33 147.1 131 62.6
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 2.0e-33 146.7 220 45.5
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 4.4e-33 145.6 218 44.0
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 5.7e-33 145.2 152 55.3
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 5.7e-33 145.2 198 47.5
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 5.7e-33 145.2 201 47.8
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 2.2e-32 143.3 181 51.4
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 3.1e-31 139.4 162 50.0
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 9.2e-31 137.9 216 45.8
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 2.3e-29 133.3 177 49.2
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 1.6e-27 127.1 133 54.9
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.6e-27 125.9 163 49.7
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 1.1e-23 114.4 83 66.3
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 1.0e-21 107.8 207 41.1
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 3.6e-19 99.4 98 54.1
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 4.1e-15 85.9 216 37.0
Lsat_1_v5_gn_7_113640 Lactuca sativa HOM05D007823 ORTHO05D000174 3.4e-09 66.2 63 57.1
Lj8C64T12 Lonicera japonica HOM05D007292 ORTHO05D009084 3.4e-09 66.2 143 41.3
AagrBONN_evm.TU.Sc2ySwM_344.666 Anthoceros agrestis HOM05D007292 ORTHO05D009084 1.2e-06 57.8 130 32.3
Pp3c10_22900 Physcomitrium patens HOM05D033432 ORTHO05D009084 6.0e-06 55.5 205 31.7


User provided reference genes

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