Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g095750.2 Solanum lycopersicum HOM05D004057 ORTHO05D004805 8.1e-97 357.1 179 100.0
Sopen12g025030 Solanum pennellii HOM05D004057 ORTHO05D004805 1.1e-72 276.9 148 93.9
Solyc09g015630.2 Solanum lycopersicum HOM05D004057 ORTHO05D392767 3.9e-43 178.7 148 68.2
Nitab4.5_0001996g0080 Nicotiana tabacum HOM05D004057 ORTHO05D004805 8.3e-17 91.3 152 43.4
Solyc11g012850.2 Solanum lycopersicum HOM05D004057 ORTHO05D004805 8.3e-17 91.3 152 43.4
Sopen11g007590 Solanum pennellii HOM05D004057 ORTHO05D004805 8.3e-17 91.3 152 43.4
PGSC0003DMG402000895 Solanum tuberosum HOM05D004057 ORTHO05D004805 8.3e-17 91.3 152 43.4
Nitab4.5_0001803g0050 Nicotiana tabacum HOM05D004057 ORTHO05D004805 1.2e-15 87.4 152 42.1
CSS0049616 Camellia sinensis var. sinensis HOM05D004057 ORTHO05D004805 1.6e-15 87.0 152 41.4
Peaxi162Scf00051g01011 Petunia axillaris HOM05D004057 ORTHO05D004805 1.6e-15 87.0 152 40.8
PGSC0003DMG400017570 Solanum tuberosum HOM05D004057 ORTHO05D004805 1.6e-15 87.0 152 40.8
ClCG08G005680 Citrullus lanatus HOM05D004057 ORTHO05D004805 2.0e-15 86.7 152 40.8
MELO3C010614.2 Cucumis melo HOM05D004057 ORTHO05D004805 2.0e-15 86.7 152 40.8
CsaV3_6G034450 Cucumis sativus L. HOM05D004057 ORTHO05D004805 2.0e-15 86.7 152 40.8
GSVIVG01008862001 Vitis vinifera HOM05D004057 ORTHO05D004805 2.0e-15 86.7 152 41.4
Lj7A342T52 Lonicera japonica HOM05D004057 ORTHO05D004805 2.7e-15 86.3 152 41.4
QL09p034469 Quercus lobata HOM05D004057 ORTHO05D004805 2.7e-15 86.3 152 40.8
THA.LOC104817365 Tarenaya hassleriana HOM05D004057 ORTHO05D004805 2.7e-15 86.3 152 40.8
Rhsim06G0103100 Rhododendron simsii HOM05D004057 ORTHO05D004805 3.5e-15 85.9 152 41.4
SalBow6G4711 Salvia bowleyana HOM05D004057 ORTHO05D004805 3.5e-15 85.9 152 40.1
Solyc06g060310.3 Solanum lycopersicum HOM05D004057 ORTHO05D004805 3.5e-15 85.9 152 40.1
Sopen06g020430 Solanum pennellii HOM05D004057 ORTHO05D004805 3.5e-15 85.9 152 40.1
Medtr1g030480 Medicago truncatula HOM05D004057 ORTHO05D004805 4.5e-15 85.5 152 39.5
Oeu026153.2 Olea europaea HOM05D004057 ORTHO05D004805 4.5e-15 85.5 152 40.8
Sopen02g019240 Solanum pennellii HOM05D000018 ORTHO05D000453 4.5e-15 85.5 54 77.8
Cpa.g.sc64.91 Carica papaya HOM05D004057 ORTHO05D004805 7.7e-15 84.7 152 40.8
TWI60G0519 Tripterygium wilfordii HOM05D004057 ORTHO05D004805 7.7e-15 84.7 152 40.1
CAN.G1040.2 Capsicum annuum HOM05D004057 ORTHO05D004805 1.0e-14 84.3 152 40.8
Nitab4.5_0000322g0180 Nicotiana tabacum HOM05D004057 ORTHO05D004805 1.0e-14 84.3 152 40.1
Potri.002G083200 Populus trichocarpa HOM05D004057 ORTHO05D004805 1.0e-14 84.3 152 39.5
Sed0018002 Sechium edule HOM05D004057 ORTHO05D004805 1.0e-14 84.3 152 40.1
FvH4_2g27000 Fragaria vesca HOM05D004057 ORTHO05D004805 1.3e-14 84.0 152 40.1
FAN15G2848 Fragaria x ananassa HOM05D004057 ORTHO05D004805 1.3e-14 84.0 152 40.1
FAN20G2710 Fragaria x ananassa HOM05D004057 ORTHO05D004805 1.3e-14 84.0 152 40.1
FAN24G3123 Fragaria x ananassa HOM05D004057 ORTHO05D004805 1.3e-14 84.0 152 40.1
Glyma.06G113500 Glycine max HOM05D004057 ORTHO05D004805 1.3e-14 84.0 152 39.5
TPR.G25791 Trifolium pratense HOM05D004057 ORTHO05D004805 1.3e-14 84.0 152 38.8
TWI34G1725 Tripterygium wilfordii HOM05D004057 ORTHO05D004805 1.3e-14 84.0 152 39.5
CiPaw.05G221100 Carya illinoinensis HOM05D004057 ORTHO05D004805 1.7e-14 83.6 152 40.8
AUR62019074 Chenopodium quinoa HOM05D004057 ORTHO05D004805 1.7e-14 83.6 152 39.5
Ca_12629_v3 Cicer arietinum L. HOM05D004057 ORTHO05D004805 1.7e-14 83.6 152 38.2
Duzib116G0519 Durio zibethinus HOM05D004057 ORTHO05D004805 1.7e-14 83.6 152 39.5
Nitab4.5_0003719g0050 Nicotiana tabacum HOM05D004057 ORTHO05D004805 1.7e-14 83.6 152 40.1
RcHm_v2.0_Chr6g0295881 Rosa chinensis HOM05D004057 ORTHO05D004805 1.7e-14 83.6 201 35.8
Sabra02G0065200 Salix brachista HOM05D004057 ORTHO05D004805 1.7e-14 83.6 152 39.5
Sc02g0004900 Simmondsia chinensis HOM05D004057 ORTHO05D004805 1.7e-14 83.6 152 39.5
TAR376G1135 Trochodendron aralioides HOM05D004057 ORTHO05D004805 1.7e-14 83.6 152 40.1
Actinidia21326 Actinidia chinensis HOM05D004057 ORTHO05D004805 2.2e-14 83.2 152 39.5
CAN.G1040.4 Capsicum annuum HOM05D004057 ORTHO05D004805 2.2e-14 83.2 152 39.5
Glyma.04G249400 Glycine max HOM05D004057 ORTHO05D004805 2.2e-14 83.2 152 39.5
Gohir.A02G072900 Gossypium hirsutum HOM05D004057 ORTHO05D004805 2.2e-14 83.2 152 39.5
Gohir.D02G080100 Gossypium hirsutum HOM05D004057 ORTHO05D004805 2.2e-14 83.2 152 39.5
Gorai.005G089400 Gossypium raimondii HOM05D004057 ORTHO05D004805 2.2e-14 83.2 152 39.5
Lj4A628G54 Lonicera japonica HOM05D004057 ORTHO05D004805 2.2e-14 83.2 152 40.1
Lj1g0001948 Lotus japonicus HOM05D004057 ORTHO05D004805 2.2e-14 83.2 152 39.5
Psat6g041720 Pisum sativum HOM05D004057 ORTHO05D004805 2.2e-14 83.2 152 38.2
PGR042G0804 Punica granatum HOM05D004057 ORTHO05D004805 2.2e-14 83.2 152 39.5
Ciclev10000821m.g Citrus clementina HOM05D004057 ORTHO05D004805 2.9e-14 82.8 152 39.5
ECA247G1991 Erigeron canadensis HOM05D004057 ORTHO05D004805 2.9e-14 82.8 152 38.2
Glyma.13G078400 Glycine max HOM05D004057 ORTHO05D004805 2.9e-14 82.8 201 34.8
Gohir.D05G237600 Gossypium hirsutum HOM05D004057 ORTHO05D004805 2.9e-14 82.8 152 39.5
Gorai.009G246000 Gossypium raimondii HOM05D004057 ORTHO05D004805 2.9e-14 82.8 152 39.5
Os10g0567400 Oryza sativa ssp. japonica HOM05D004057 ORTHO05D004805 2.9e-14 82.8 152 38.2
Phvul.008G161000 Phaseolus vulgaris HOM05D004057 ORTHO05D004805 2.9e-14 82.8 152 38.8
Phvul.008G167850 Phaseolus vulgaris HOM05D004057 ORTHO05D004805 2.9e-14 82.8 152 38.8
Hund17295 Selenicereus undatus HOM05D004057 ORTHO05D004805 3.8e-14 82.4 152 38.8
Cfa016023 Carpinus fangiana HOM05D004057 ORTHO05D004805 5.0e-14 82.0 152 40.1
Cc10_g11980 Coffea canephora HOM05D004057 ORTHO05D004805 5.0e-14 82.0 152 39.5
Haze_00436 Corylus avellana HOM05D004057 ORTHO05D004805 5.0e-14 82.0 152 40.1
SalBow7G0573 Salvia bowleyana HOM05D004057 ORTHO05D004805 5.0e-14 82.0 152 39.5
Zm00001eb362510 Zea mays HOM05D004057 ORTHO05D004805 5.0e-14 82.0 152 38.2
Aa31LG6G9340 Aethionema arabicum HOM05D004057 ORTHO05D004805 6.5e-14 81.6 152 38.8
ATR0584G119 Amborella trichopoda HOM05D004057 ORTHO05D004805 6.5e-14 81.6 201 34.3
AUR62014331 Chenopodium quinoa HOM05D004057 ORTHO05D004805 6.5e-14 81.6 152 38.8
HanXRQChr04g0111611 Helianthus annuus HOM05D004057 ORTHO05D004805 6.5e-14 81.6 152 38.8
Os10g0567100 Oryza sativa ssp. japonica HOM05D004057 ORTHO05D004805 6.5e-14 81.6 152 38.8
Atru.chr13.1487 Acer truncatum HOM05D004057 ORTHO05D004805 8.5e-14 81.3 201 34.3
arahy.Tifrunner.gnm1.ann1.P29Y0H Arachis hypogaea HOM05D004057 ORTHO05D004805 8.5e-14 81.3 152 38.2
arahy.Tifrunner.gnm1.ann1.PA3NAF Arachis hypogaea HOM05D004057 ORTHO05D004805 8.5e-14 81.3 152 38.2
CiPaw.06G031400 Carya illinoinensis HOM05D004057 ORTHO05D004805 8.5e-14 81.3 152 40.1
Duzib093G0750 Durio zibethinus HOM05D004057 ORTHO05D004805 8.5e-14 81.3 152 38.2
FAN27G1712 Fragaria x ananassa HOM05D004057 ORTHO05D004805 8.5e-14 81.3 152 38.8
Potri.005G178300 Populus trichocarpa HOM05D004057 ORTHO05D004805 8.5e-14 81.3 152 39.5
Gohir.A05G235300 Gossypium hirsutum HOM05D004057 ORTHO05D004805 1.5e-13 80.5 152 38.8
Lalb_Chr10g0101631 Lupinus albus HOM05D004057 ORTHO05D004805 1.5e-13 80.5 152 37.5
Glyma.14G150600 Glycine max HOM05D004057 ORTHO05D004805 1.9e-13 80.1 201 33.8
MBI16_g07661_MAGBIO Magnolia biondii HOM05D004057 ORTHO05D004805 1.9e-13 80.1 152 37.5
Manes.02G163700 Manihot esculenta HOM05D004057 ORTHO05D004805 2.5e-13 79.7 152 37.5
Ah.05g171070 Amaranthus hybridus HOM05D004057 ORTHO05D004805 3.2e-13 79.3 152 38.2
Dinv27308 Davidia involucrata HOM05D004057 ORTHO05D004805 3.2e-13 79.3 191 33.5
Migut.C01130 Erythranthe guttata HOM05D004057 ORTHO05D004805 3.2e-13 79.3 152 37.5
SGA_v2.0_scaffold24G10457 Striga asiatica HOM05D004057 ORTHO05D004805 3.2e-13 79.3 201 33.3
Zm00001eb140370 Zea mays HOM05D004057 ORTHO05D004805 3.2e-13 79.3 152 36.8
Eucgr.F03791 Eucalyptus grandis HOM05D004057 ORTHO05D004805 4.2e-13 79.0 152 37.5
Thecc.08G125900 Theobroma cacao HOM05D004057 ORTHO05D004805 4.2e-13 79.0 152 38.2
TAR628G0371 Trochodendron aralioides HOM05D004057 ORTHO05D004805 4.2e-13 79.0 152 38.2
Dinv07215 Davidia involucrata HOM05D004057 ORTHO05D004805 5.5e-13 78.6 152 38.2
Sabra05G0134800 Salix brachista HOM05D004057 ORTHO05D004805 5.5e-13 78.6 152 38.2
MSTRG.24171 Avicennia marina HOM05D004057 ORTHO05D004805 9.4e-13 77.8 152 37.5
EL10Ac1g01020 Beta vulgaris HOM05D004057 ORTHO05D004805 9.4e-13 77.8 152 38.2
Lsat_1_v5_gn_1_8361 Lactuca sativa HOM05D004057 ORTHO05D004805 9.4e-13 77.8 152 37.5
DCAR_014388 Daucus carota HOM05D004057 ORTHO05D004805 1.2e-12 77.4 152 36.8
Prupe.1G495400 Prunus persica HOM05D004057 ORTHO05D004805 1.2e-12 77.4 152 38.2
VMungo0647G0399 Vigna mungo HOM05D004057 ORTHO05D004805 1.2e-12 77.4 152 36.8
HanXRQChr11g0325991 Helianthus annuus HOM05D004057 ORTHO05D004805 1.6e-12 77.0 152 36.8
ECA232G4152 Erigeron canadensis HOM05D004057 ORTHO05D004805 2.1e-12 76.6 152 36.2
Lalb_Chr17g0343711 Lupinus albus HOM05D004057 ORTHO05D004805 2.1e-12 76.6 152 36.2
Thhalv10011377m.g Eutrema salsugineum HOM05D004057 ORTHO05D004805 2.7e-12 76.3 152 36.2
Sp1g33540 Schrenkiella parvula HOM05D004057 ORTHO05D004805 2.7e-12 76.3 152 36.2
Aqoxy6G00221 Aquilegia oxysepala HOM05D004057 ORTHO05D004805 3.6e-12 75.9 152 36.2
AL1G52310 Arabidopsis lyrata HOM05D004057 ORTHO05D004805 4.7e-12 75.5 152 36.8
Carub.0001s3519 Capsella rubella HOM05D004057 ORTHO05D004805 4.7e-12 75.5 152 36.8
CARHR035930 Cardamine hirsuta HOM05D004057 ORTHO05D004805 4.7e-12 75.5 152 36.8
MD08G1162200 Malus domestica HOM05D004057 ORTHO05D004805 4.7e-12 75.5 152 37.5
MSTRG.1440 Avicennia marina HOM05D004057 ORTHO05D004805 6.1e-12 75.1 152 37.5
Hma1.2p1_0129F.1_g060250 Hydrangea macrophylla HOM05D004057 ORTHO05D004805 6.1e-12 75.1 152 36.2
Lalb_Chr08g0241431 Lupinus albus HOM05D004057 ORTHO05D004805 6.1e-12 75.1 186 33.3
BcaB04g17588 Brassica carinata HOM05D004057 ORTHO05D004805 8.0e-12 74.7 152 35.5
MD15G1347600 Malus domestica HOM05D004057 ORTHO05D004805 8.0e-12 74.7 152 37.5
BcaC08g42850 Brassica carinata HOM05D004057 ORTHO05D004805 1.0e-11 74.3 152 34.9
A10p07530 Brassica napus HOM05D004057 ORTHO05D004805 1.0e-11 74.3 152 34.9
C06p00650 Brassica napus HOM05D004057 ORTHO05D004805 1.0e-11 74.3 152 34.9
BolC6t35201H Brassica oleracea HOM05D004057 ORTHO05D004805 1.0e-11 74.3 152 34.9
BraSC36t46051Z Brassica rapa HOM05D004057 ORTHO05D004805 1.0e-11 74.3 152 34.9
PSO170G0366 Papaver somniferum HOM05D004057 ORTHO05D004805 1.0e-11 74.3 152 36.2
PSO528G0101 Papaver somniferum HOM05D004057 ORTHO05D004805 1.0e-11 74.3 152 36.2
BcaC07g37298 Brassica carinata HOM05D004057 ORTHO05D004805 1.4e-11 73.9 152 35.5
C08p07320 Brassica napus HOM05D004057 ORTHO05D004805 1.4e-11 73.9 152 35.5
BolC8t47573H Brassica oleracea HOM05D004057 ORTHO05D004805 1.4e-11 73.9 152 35.5
AT1G44446 Arabidopsis thaliana HOM05D004057 ORTHO05D004805 1.8e-11 73.6 152 36.2
BcaB07g33948 Brassica carinata HOM05D004057 ORTHO05D004805 3.0e-11 72.8 152 34.2
Nn5g28304 Nelumbo nucifera HOM05D004057 ORTHO05D004805 3.0e-11 72.8 152 35.5
Nn1g08791 Nelumbo nucifera HOM05D004057 ORTHO05D004805 6.8e-11 71.6 152 35.5
CDE08G1132 Ceratophyllum demersum HOM05D004057 ORTHO05D004805 8.8e-11 71.2 152 34.9
CAN.G2.28 Capsicum annuum HOM05D004057 ORTHO05D004805 6.3e-09 65.1 35 88.6
unitig_22.g6737 Utricularia gibba HOM05D004057 ORTHO05D004805 6.3e-09 65.1 152 32.2
SGA_v2.0_scaffold275G46567 Striga asiatica HOM05D004057 ORTHO05D004805 1.4e-08 63.9 152 34.2
CDE02G4293 Ceratophyllum demersum HOM05D004057 ORTHO05D004805 4.1e-08 62.4 152 32.9
Sed0006403 Sechium edule HOM05D004057 ORTHO05D004805 5.4e-08 62.0 35 80.0
Oeu040414.2 Olea europaea HOM05D004057 ORTHO05D004805 9.1e-08 61.2 205 29.8
Sopen04g007250 Solanum pennellii HOM05D004057 ORTHO05D004805 3.5e-07 59.3 30 93.3
Hund26806 Selenicereus undatus HOM05D004057 ORTHO05D004805 2.3e-06 56.6 35 74.3


User provided reference genes

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