Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g095350.3 Solanum lycopersicum HOM05D005791 ORTHO05D034273 1.5e-39 165.6 78 100.0
Solyc03g095360.3 Solanum lycopersicum HOM05D005791 ORTHO05D007452 5.7e-23 110.5 60 83.3
Sopen03g025370 Solanum pennellii HOM05D005791 ORTHO05D007452 7.5e-23 110.2 63 81.0
Sopen03g025380 Solanum pennellii HOM05D005791 ORTHO05D007452 7.5e-23 110.2 63 81.0
Nitab4.5_0000103g0040 Nicotiana tabacum HOM05D005791 ORTHO05D007452 1.6e-20 102.4 63 73.0
Nitab4.5_0001493g0030 Nicotiana tabacum HOM05D005791 ORTHO05D007452 4.5e-20 100.9 63 71.4
Oeu044175.1 Olea europaea HOM05D005791 ORTHO05D007452 7.7e-20 100.1 60 73.3
BcaB02g07651 Brassica carinata HOM05D005791 ORTHO05D007452 8.6e-19 96.7 63 63.5
BcaC08g44785 Brassica carinata HOM05D005791 ORTHO05D007452 8.6e-19 96.7 63 63.5
C06p23560 Brassica napus HOM05D005791 ORTHO05D007452 8.6e-19 96.7 63 63.5
AL5G37790 Arabidopsis lyrata HOM05D005791 ORTHO05D007452 1.1e-18 96.3 63 63.5
AT3G56460 Arabidopsis thaliana HOM05D005791 ORTHO05D007452 1.1e-18 96.3 63 63.5
Actinidia31644 Actinidia chinensis HOM05D005791 ORTHO05D007452 1.5e-18 95.9 63 65.1
CAN.G77.10 Capsicum annuum HOM05D005791 ORTHO05D007452 1.5e-18 95.9 63 69.8
Hma1.2p1_0264F.1_g105810 Hydrangea macrophylla HOM05D005791 ORTHO05D034273 1.5e-18 95.9 71 62.0
A07p22940 Brassica napus HOM05D005791 ORTHO05D007452 3.3e-18 94.7 63 61.9
BolC6t37528H Brassica oleracea HOM05D005791 ORTHO05D007452 3.3e-18 94.7 63 61.9
BraA07t29959Z Brassica rapa HOM05D005791 ORTHO05D007452 3.3e-18 94.7 63 61.9
Aqoxy2G00691 Aquilegia oxysepala HOM05D005791 ORTHO05D007452 4.2e-18 94.4 58 69.0
CARHR166580 Cardamine hirsuta HOM05D005791 ORTHO05D007452 4.2e-18 94.4 63 61.9
Eucgr.G03169 Eucalyptus grandis HOM05D005791 ORTHO05D007452 4.2e-18 94.4 63 65.1
Nn2g10215 Nelumbo nucifera HOM05D005791 ORTHO05D007452 4.2e-18 94.4 63 61.9
AL5G37780 Arabidopsis lyrata HOM05D005791 ORTHO05D007452 7.2e-18 93.6 63 61.9
TWI09G0105 Tripterygium wilfordii HOM05D005791 ORTHO05D007452 7.2e-18 93.6 63 61.9
Aa31LG10G11340 Aethionema arabicum HOM05D005791 ORTHO05D007452 9.5e-18 93.2 63 61.9
Carub.0005s2323 Capsella rubella HOM05D005791 ORTHO05D007452 9.5e-18 93.2 63 60.3
HPP92_024985 Vanilla planifolia HOM05D005791 ORTHO05D007452 9.5e-18 93.2 63 65.1
Migut.F01222 Erythranthe guttata HOM05D005791 ORTHO05D007452 2.1e-17 92.0 63 63.5
Thhalv10006076m.g Eutrema salsugineum HOM05D005791 ORTHO05D007452 2.1e-17 92.0 63 58.7
Lalb_Chr08g0239301 Lupinus albus HOM05D005791 ORTHO05D007452 2.1e-17 92.0 58 63.8
MBI15_g31024_MAGBIO Magnolia biondii HOM05D005791 ORTHO05D007452 2.1e-17 92.0 63 63.5
ATR1127G121 Amborella trichopoda HOM05D005791 ORTHO05D007452 2.8e-17 91.7 63 61.9
TPR.G13959 Trifolium pratense HOM05D005791 ORTHO05D007452 2.8e-17 91.7 63 63.5
Hma1.2p1_0264F.1_g105800 Hydrangea macrophylla HOM05D005791 ORTHO05D007452 3.6e-17 91.3 63 63.5
Rhsim03G0154600 Rhododendron simsii HOM05D005791 ORTHO05D007452 3.6e-17 91.3 63 63.5
Rhsim03G0154800 Rhododendron simsii HOM05D005791 ORTHO05D007452 3.6e-17 91.3 63 63.5
Cpa.g.sc1097.1 Carica papaya HOM05D005791 ORTHO05D007452 4.7e-17 90.9 63 60.3
HPP92_024988 Vanilla planifolia HOM05D005791 ORTHO05D007452 4.7e-17 90.9 63 63.5
HPP92_024990 Vanilla planifolia HOM05D005791 ORTHO05D007452 4.7e-17 90.9 58 67.2
Glyma.06G140300 Glycine max HOM05D005791 ORTHO05D007452 6.1e-17 90.5 63 60.3
Medtr3g093620 Medicago truncatula HOM05D005791 ORTHO05D007452 6.1e-17 90.5 63 61.9
Cfa001181 Carpinus fangiana HOM05D005791 ORTHO05D007452 8.0e-17 90.1 63 55.6
DCAR_014656 Daucus carota HOM05D005791 ORTHO05D007452 8.0e-17 90.1 63 60.3
QL08p065276 Quercus lobata HOM05D005791 ORTHO05D007452 8.0e-17 90.1 63 57.1
CSS0010135 Camellia sinensis var. sinensis HOM05D005791 ORTHO05D007452 1.0e-16 89.7 63 63.5
CiPaw.02G199500 Carya illinoinensis HOM05D005791 ORTHO05D007452 1.0e-16 89.7 58 60.3
Dinv21869 Davidia involucrata HOM05D005791 ORTHO05D007452 1.0e-16 89.7 58 67.2
Lj1A970G57 Lonicera japonica HOM05D005791 ORTHO05D007452 1.0e-16 89.7 63 57.1
unitig_736.g22425 Utricularia gibba HOM05D005791 ORTHO05D007452 1.0e-16 89.7 63 61.9
Ciclev10031975m.g Citrus clementina HOM05D005791 ORTHO05D007452 1.4e-16 89.4 63 60.3
Cc02_g05050 Coffea canephora HOM05D005791 ORTHO05D007452 1.4e-16 89.4 63 61.9
THA.LOC104803216 Tarenaya hassleriana HOM05D005791 ORTHO05D007452 1.4e-16 89.4 63 58.7
Glyma.04G224400 Glycine max HOM05D005791 ORTHO05D007452 1.8e-16 89.0 63 58.7
Lj1g0000176 Lotus japonicus HOM05D005791 ORTHO05D007452 1.8e-16 89.0 63 58.7
Atru.chr12.209 Acer truncatum HOM05D005791 ORTHO05D007452 2.3e-16 88.6 63 58.7
arahy.Tifrunner.gnm1.ann1.B7UYEY Arachis hypogaea HOM05D005791 ORTHO05D007452 2.3e-16 88.6 63 58.7
Gohir.D05G278500 Gossypium hirsutum HOM05D005791 ORTHO05D007452 2.3e-16 88.6 63 57.1
Gorai.009G292000 Gossypium raimondii HOM05D005791 ORTHO05D007452 2.3e-16 88.6 63 57.1
Sp5g06080 Schrenkiella parvula HOM05D005791 ORTHO05D007452 2.3e-16 88.6 63 57.1
MSTRG.153 Avicennia marina HOM05D005791 ORTHO05D007452 3.0e-16 88.2 63 60.3
Potri.019G065700 Populus trichocarpa HOM05D005791 ORTHO05D007452 3.0e-16 88.2 63 57.1
Sc14g0005690 Simmondsia chinensis HOM05D005791 ORTHO05D007452 3.0e-16 88.2 63 60.3
SGA_v2.0_scaffold78G25489 Striga asiatica HOM05D005791 ORTHO05D007452 3.0e-16 88.2 58 65.5
PSO384G5040 Papaver somniferum HOM05D005791 ORTHO05D007452 4.0e-16 87.8 63 57.1
Psat5g069880 Pisum sativum HOM05D005791 ORTHO05D007452 4.0e-16 87.8 63 58.7
Sabra19G0078900 Salix brachista HOM05D005791 ORTHO05D007452 4.0e-16 87.8 63 58.7
arahy.Tifrunner.gnm1.ann1.PBP7IS Arachis hypogaea HOM05D005791 ORTHO05D007452 5.2e-16 87.4 63 57.1
CANSAT56G2835 Cannabis sativa HOM05D005791 ORTHO05D007452 5.2e-16 87.4 63 57.1
COL.COLO4_19494 Corchorus olitorius HOM05D005791 ORTHO05D007452 5.2e-16 87.4 63 57.1
TAR636G2576 Trochodendron aralioides HOM05D005791 ORTHO05D007452 5.2e-16 87.4 63 60.3
GSVIVG01032867001 Vitis vinifera HOM05D005791 ORTHO05D007452 5.2e-16 87.4 63 55.6
PGR044G2580 Punica granatum HOM05D005791 ORTHO05D007452 6.8e-16 87.0 63 55.6
Duzib106G2079 Durio zibethinus HOM05D005791 ORTHO05D007452 8.9e-16 86.7 63 57.1
Gohir.D13G009200 Gossypium hirsutum HOM05D005791 ORTHO05D007452 8.9e-16 86.7 63 55.6
Gorai.013G009900 Gossypium raimondii HOM05D005791 ORTHO05D007452 8.9e-16 86.7 63 55.6
Lsat_1_v5_gn_8_11160 Lactuca sativa HOM05D005791 ORTHO05D007452 8.9e-16 86.7 63 58.7
PSO339G3520 Papaver somniferum HOM05D005791 ORTHO05D007452 8.9e-16 86.7 63 57.1
Gohir.A13G008400 Gossypium hirsutum HOM05D005791 ORTHO05D007452 1.2e-15 86.3 63 55.6
SalBow2G0183 Salvia bowleyana HOM05D005791 ORTHO05D007452 1.5e-15 85.9 63 58.7
Gohir.A05G276800 Gossypium hirsutum HOM05D005791 ORTHO05D007452 2.0e-15 85.5 63 54.0
Gohir.D13G009100 Gossypium hirsutum HOM05D005791 ORTHO05D007452 2.0e-15 85.5 63 54.0
FvH4_7g26290 Fragaria vesca HOM05D005791 ORTHO05D007452 2.6e-15 85.1 63 55.6
FAN06G4413 Fragaria x ananassa HOM05D005791 ORTHO05D007452 2.6e-15 85.1 63 55.6
MD07G1238300 Malus domestica HOM05D005791 ORTHO05D007452 2.6e-15 85.1 63 54.0
Manes.10G004300 Manihot esculenta HOM05D005791 ORTHO05D007452 2.6e-15 85.1 56 60.7
RcHm_v2.0_Chr1g0372751 Rosa chinensis HOM05D005791 ORTHO05D007452 2.6e-15 85.1 63 55.6
Thecc.10G187200 Theobroma cacao HOM05D005791 ORTHO05D007452 2.6e-15 85.1 63 54.0
VMungo1309G2173 Vigna mungo HOM05D005791 ORTHO05D007452 2.6e-15 85.1 58 56.9
Phvul.009G041600 Phaseolus vulgaris HOM05D005791 ORTHO05D007452 4.4e-15 84.3 53 62.3
vmacro06873 Vaccinium macrocarpon HOM05D005791 ORTHO05D007452 4.4e-15 84.3 63 60.3
Zm00001eb070150 Zea mays HOM05D005791 ORTHO05D007452 5.7e-15 84.0 58 63.8
CDE04G1295 Ceratophyllum demersum HOM05D005791 ORTHO05D034273 7.5e-15 83.6 54 61.1
Hund13427 Selenicereus undatus HOM05D005791 ORTHO05D007452 9.8e-15 83.2 63 54.0
vmacro06874 Vaccinium macrocarpon HOM05D005791 ORTHO05D007452 9.8e-15 83.2 63 57.1
CDE12G0791 Ceratophyllum demersum HOM05D005791 ORTHO05D007452 1.3e-14 82.8 63 55.6
FAN10G1145 Fragaria x ananassa HOM05D005791 ORTHO05D007452 1.3e-14 82.8 63 54.0
HanXRQChr08g0222991 Helianthus annuus HOM05D005791 ORTHO05D007452 1.3e-14 82.8 63 57.1
Ah.10g030630 Amaranthus hybridus HOM05D005791 ORTHO05D007452 1.7e-14 82.4 63 55.6
Os05g0313500 Oryza sativa ssp. japonica HOM05D005791 ORTHO05D007452 1.7e-14 82.4 63 58.7
ClCG11G005490 Citrullus lanatus HOM05D005791 ORTHO05D007452 4.9e-14 80.9 64 53.1
AUR62031667 Chenopodium quinoa HOM05D005791 ORTHO05D007452 1.1e-13 79.7 63 55.6
MELO3C022102.2 Cucumis melo HOM05D005791 ORTHO05D007452 1.1e-13 79.7 64 53.1
CsaV3_5G039240 Cucumis sativus L. HOM05D005791 ORTHO05D007452 1.4e-13 79.3 64 53.1
Mapoly0006s0302 Marchantia polymorpha HOM05D005791 ORTHO05D007452 1.4e-13 79.3 60 51.7
AUR62032550 Chenopodium quinoa HOM05D005791 ORTHO05D007452 1.8e-13 79.0 63 54.0
AagrBONN_evm.TU.Sc2ySwM_362.2815 Anthoceros agrestis HOM05D005791 ORTHO05D007452 2.4e-13 78.6 65 46.2
EL10Ac2g02691 Beta vulgaris HOM05D005791 ORTHO05D007452 2.4e-13 78.6 63 54.0
Sed0013812 Sechium edule HOM05D005791 ORTHO05D007452 4.1e-13 77.8 63 52.4
HanXRQChr05g0144231 Helianthus annuus HOM05D005791 ORTHO05D007452 7.0e-13 77.0 58 55.2
Gohir.A13G008500 Gossypium hirsutum HOM05D005791 ORTHO05D007452 4.6e-12 74.3 57 57.9
Lsat_1_v5_gn_8_11180 Lactuca sativa HOM05D005791 ORTHO05D007452 1.0e-11 73.2 63 47.6
SMO164G0125 Selaginella moellendorffii HOM05D005791 ORTHO05D007452 6.6e-11 70.5 55 50.9
DCAR_018050 Daucus carota HOM05D005791 ORTHO05D007452 1.1e-10 69.7 59 50.8
Pp3c16_1190 Physcomitrium patens HOM05D005791 ORTHO05D007452 7.3e-10 67.0 60 46.7
HanXRQChr08g0222851 Helianthus annuus HOM05D005791 ORTHO05D007452 1.2e-09 66.2 53 49.1
ECA233G0423 Erigeron canadensis HOM05D005791 ORTHO05D007452 6.2e-09 63.9 58 48.3
PRCOL_00005743 Prasinoderma coloniale HOM05D005791 ORTHO05D007452 1.8e-08 62.4 62 45.2
Cre16.g674050 Chlamydomonas reinhardtii HOM05D005791 ORTHO05D007452 8.9e-08 60.1 60 36.7


User provided reference genes

Program Settings