Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 8.9e-89 330.5 196 100.0
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 2.0e-88 329.3 196 98.5
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 9.8e-88 327.0 196 99.0
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.0e-81 307.0 202 92.1
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 3.0e-76 288.9 202 88.6
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 4.4e-72 275.0 197 80.7
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 4.4e-72 275.0 202 82.2
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 2.9e-71 272.3 202 69.3
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 3.7e-71 271.9 200 77.5
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 3.7e-71 271.9 202 75.7
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 9.2e-70 267.3 193 77.7
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 1.2e-69 266.9 193 85.5
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 1.2e-69 266.9 193 84.5
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 1.2e-69 266.9 195 67.7
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 2.7e-69 265.8 192 79.7
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 2.7e-69 265.8 192 74.5
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 6.0e-69 264.6 196 75.5
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 6.0e-69 264.6 182 85.2
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 7.8e-69 264.2 198 68.7
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 1.3e-68 263.5 197 67.0
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 1.7e-68 263.1 197 66.5
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 2.3e-68 262.7 185 80.0
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 2.3e-68 262.7 199 67.3
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 3.0e-68 262.3 201 67.7
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.0e-68 261.5 184 70.7
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.6e-68 261.2 195 68.7
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 6.6e-68 261.2 197 72.1
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 6.6e-68 261.2 182 72.5
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 6.6e-68 261.2 204 68.1
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 6.6e-68 261.2 197 79.7
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.9e-67 259.6 200 67.5
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 1.9e-67 259.6 182 78.0
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 2.5e-67 259.2 191 69.1
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 2.5e-67 259.2 195 69.7
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 2.5e-67 259.2 193 71.5
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 3.3e-67 258.8 201 76.1
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 3.3e-67 258.8 192 80.7
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 4.3e-67 258.5 199 72.4
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 4.3e-67 258.5 197 78.7
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 4.3e-67 258.5 182 71.4
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 7.3e-67 257.7 196 65.8
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 7.3e-67 257.7 201 66.7
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 9.5e-67 257.3 188 76.1
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 1.6e-66 256.5 198 72.7
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.6e-66 256.5 201 66.7
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 1.6e-66 256.5 192 70.8
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 2.1e-66 256.1 199 68.3
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 2.1e-66 256.1 204 75.0
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 4.7e-66 255.0 199 72.4
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 6.2e-66 254.6 181 79.0
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 6.2e-66 254.6 194 73.2
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 1.1e-65 253.8 196 70.4
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.4e-65 253.4 200 65.5
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 1.4e-65 253.4 185 82.2
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 2.3e-65 252.7 192 65.6
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 3.1e-65 252.3 197 68.0
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 5.2e-65 251.5 200 80.5
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 5.2e-65 251.5 186 70.4
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 5.2e-65 251.5 195 76.4
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 8.9e-65 250.8 178 84.3
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 8.9e-65 250.8 197 64.5
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 8.9e-65 250.8 200 65.0
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 2.0e-64 249.6 197 71.6
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 2.6e-64 249.2 191 70.7
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 3.4e-64 248.8 199 66.3
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 3.4e-64 248.8 188 67.6
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 3.4e-64 248.8 207 74.4
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 4.4e-64 248.4 186 76.3
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 4.4e-64 248.4 168 83.9
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 9.9e-64 247.3 188 74.5
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 9.9e-64 247.3 198 67.2
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 1.3e-63 246.9 188 67.0
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 1.7e-63 246.5 188 73.4
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 2.2e-63 246.1 188 67.0
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 2.9e-63 245.7 181 67.4
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 2.9e-63 245.7 180 83.3
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 3.7e-63 245.4 197 63.5
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 8.3e-63 244.2 187 83.4
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.9e-62 243.0 192 70.8
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 1.9e-62 243.0 194 74.2
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 1.9e-62 243.0 188 66.0
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 2.4e-62 242.7 199 68.8
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 2.4e-62 242.7 199 68.8
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 2.4e-62 242.7 185 84.3
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 7.1e-62 241.1 192 77.6
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 7.1e-62 241.1 192 77.6
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 1.2e-61 240.4 199 72.4
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.6e-61 240.0 199 72.4
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 6.0e-61 238.0 188 76.6
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 7.8e-61 237.7 192 77.1
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.3e-60 236.9 182 76.9
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 1.3e-60 236.9 192 68.2
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.3e-60 236.9 203 71.4
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 1.7e-60 236.5 199 62.8
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 2.3e-60 236.1 192 68.2
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 3.3e-59 232.3 157 96.2
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.8e-58 229.2 187 75.4
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 8.1e-58 227.6 181 64.1
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 3.1e-57 225.7 199 70.4
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 6.8e-57 224.6 129 80.6
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.8e-57 224.6 129 80.6
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 8.9e-57 224.2 120 85.0
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.6e-56 221.1 129 79.8
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 3.8e-55 218.8 131 77.1
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.9e-54 216.5 126 80.2
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 5.4e-54 214.9 115 82.6
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 4.6e-53 211.8 194 68.0
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 2.3e-52 209.5 119 83.2
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 5.1e-52 208.4 186 64.5
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.1e-51 207.2 193 64.8
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 9.6e-51 204.1 192 74.0
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 9.6e-51 204.1 129 73.6
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 2.8e-50 202.6 151 72.2
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 1.8e-49 199.9 123 75.6
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.9e-46 189.9 198 62.6
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 6.0e-45 184.9 91 91.2
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.7e-44 183.3 93 90.3
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.7e-44 183.3 90 93.3
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.9e-43 179.9 154 59.1
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 3.3e-35 152.5 119 87.4
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 2.8e-34 149.4 82 82.9
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.8e-28 130.2 101 55.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 5.6e-27 125.2 120 55.8
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.1e-26 123.2 119 66.4
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 2.0e-24 116.7 59 88.1
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.0e-23 114.4 93 54.8
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.8e-20 103.6 196 50.0
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 8.7e-20 101.3 97 48.5
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-17 94.4 89 55.1
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.3e-15 87.4 113 46.9
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.2e-14 82.8 81 93.8
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 4.6e-13 79.0 116 37.1
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.3e-10 70.9 45 75.6
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.7e-10 69.3 37 81.1
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.0e-07 58.9 102 41.2
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 8.5e-07 58.2 83 43.4


User provided reference genes

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