Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 7.5e-124 447.2 227 100.0
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 1.2e-105 386.7 201 98.0
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.3e-94 350.1 201 87.6
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 7.9e-81 304.3 200 79.5
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 2.4e-69 266.2 203 70.9
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 4.2e-66 255.4 197 67.0
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 3.7e-62 242.3 200 62.5
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 3.7e-62 242.3 200 62.5
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 8.2e-62 241.1 200 62.5
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 1.2e-60 237.3 209 58.9
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 3.4e-60 235.7 197 61.9
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 3.4e-60 235.7 198 60.6
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 4.5e-60 235.3 170 70.0
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 4.5e-60 235.3 158 72.2
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 5.9e-60 235.0 192 65.1
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 7.7e-60 234.6 158 77.8
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 1.0e-59 234.2 195 62.6
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 1.3e-59 233.8 197 61.9
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 1.3e-59 233.8 198 62.1
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 1.3e-59 233.8 198 62.1
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 1.7e-59 233.4 198 61.6
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 2.2e-59 233.0 198 62.1
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 3.8e-59 232.3 198 63.1
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 5.0e-59 231.9 197 63.5
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 5.0e-59 231.9 198 61.6
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 6.5e-59 231.5 170 67.6
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 8.5e-59 231.1 189 66.1
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 1.1e-58 230.7 203 60.1
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 1.1e-58 230.7 203 60.1
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 1.9e-58 229.9 198 61.6
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 1.9e-58 229.9 200 63.5
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 4.2e-58 228.8 198 62.1
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 5.5e-58 228.4 199 60.3
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 9.4e-58 227.6 199 61.3
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 9.4e-58 227.6 187 63.1
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 1.6e-57 226.9 170 65.9
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 2.7e-57 226.1 196 61.7
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 7.9e-57 224.6 198 60.6
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.4e-56 223.8 188 63.8
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 3.0e-56 222.6 160 69.4
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 6.7e-56 221.5 159 71.1
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 6.7e-56 221.5 148 74.3
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 6.7e-56 221.5 148 74.3
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 3.3e-55 219.2 159 68.6
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 4.3e-55 218.8 196 58.2
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 1.1e-53 214.2 197 56.3
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 1.4e-53 213.8 170 62.4
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 1.8e-53 213.4 158 66.5
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 1.8e-53 213.4 159 65.4
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 1.8e-53 213.4 200 56.5
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 3.1e-53 212.6 198 57.1
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 3.1e-53 212.6 182 59.3
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.1e-53 212.2 199 56.8
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 5.3e-53 211.8 162 65.4
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 6.9e-53 211.5 162 66.0
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 1.2e-52 210.7 173 61.8
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 1.2e-52 210.7 158 69.0
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 1.5e-52 210.3 194 58.8
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 1.5e-52 210.3 210 54.3
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 2.6e-52 209.5 200 55.5
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.6e-52 209.5 200 55.5
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.4e-52 209.1 201 54.7
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.4e-52 209.1 200 55.5
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 1.7e-51 206.8 205 53.2
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 8.5e-51 204.5 161 62.7
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 1.1e-50 204.1 162 61.7
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 2.5e-50 203.0 170 59.4
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 5.5e-50 201.8 215 53.0
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.4e-50 201.1 205 53.7
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 1.6e-49 200.3 265 45.7
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 2.1e-49 199.9 170 60.0
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 2.7e-49 199.5 206 55.3
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 2.7e-49 199.5 200 56.0
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 4.7e-49 198.7 110 88.2
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 6.1e-49 198.4 152 67.1
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 7.9e-49 198.0 168 59.5
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 1.0e-48 197.6 220 51.8
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 1.4e-48 197.2 253 49.0
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.4e-48 197.2 144 66.7
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 2.3e-48 196.4 149 65.1
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 4.4e-47 192.2 165 60.0
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 4.2e-42 175.6 198 50.0
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 5.5e-42 175.3 162 57.4
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 2.1e-41 173.3 171 53.8
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 2.7e-41 172.9 156 57.1
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 8.0e-41 171.4 144 60.4
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 8.0e-41 171.4 145 62.1
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.8e-40 170.2 163 55.2
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 2.0e-39 166.8 203 48.3
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.7e-38 163.7 194 50.5
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 4.8e-38 162.2 197 49.2
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.4e-37 160.6 156 53.2
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 4.1e-37 159.1 144 56.9
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 1.0e-35 154.5 115 65.2
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 6.3e-30 135.2 108 62.0
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.0e-27 127.9 111 55.0
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 7.2e-26 121.7 147 45.6
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.7e-23 112.1 156 41.7
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.3e-22 108.6 112 48.2
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 7.0e-21 105.1 105 49.5
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 2.0e-20 103.6 162 40.7
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 3.5e-20 102.8 138 44.2
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.3e-19 100.9 160 41.9
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 4.0e-16 89.4 111 45.0
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 3.4e-07 59.7 36 72.2
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.7e-06 57.4 66 47.0


User provided reference genes

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