Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g083570.3 Solanum lycopersicum HOM05D007220 ORTHO05D009058 4.2e-88 328.2 187 100.0
Sopen03g023380 Solanum pennellii HOM05D007220 ORTHO05D009058 2.5e-72 275.8 187 87.7
Nitab4.5_0001548g0050 Nicotiana tabacum HOM05D007220 ORTHO05D009058 2.2e-60 236.1 191 78.0
Peaxi162Scf00241g00624 Petunia axillaris HOM05D007220 ORTHO05D009058 5.3e-59 231.5 189 75.7
PGSC0003DMG400023001 Solanum tuberosum HOM05D007220 ORTHO05D009058 9.1e-59 230.7 254 61.4
CAN.G152.17 Capsicum annuum HOM05D007220 ORTHO05D009058 8.0e-55 217.6 196 74.5
Nitab4.5_0000072g0560 Nicotiana tabacum HOM05D007220 ORTHO05D009058 1.8e-54 216.5 189 72.5
SGA_v2.0_scaffold486G52391 Striga asiatica HOM05D007220 ORTHO05D009058 2.4e-43 179.5 183 54.1
Cc02_g04040 Coffea canephora HOM05D007220 ORTHO05D009058 7.0e-43 177.9 221 59.7
unitig_46.g18768 Utricularia gibba HOM05D007220 ORTHO05D009058 1.1e-40 170.6 184 56.5
MSTRG.27183 Avicennia marina HOM05D007220 ORTHO05D009058 1.9e-40 169.9 194 54.6
GSVIVG01018558001 Vitis vinifera HOM05D007220 ORTHO05D009058 4.3e-40 168.7 188 56.4
HanXRQChr08g0223851 Helianthus annuus HOM05D007220 ORTHO05D009058 1.2e-39 167.2 165 58.8
Lsat_1_v5_gn_8_9340 Lactuca sativa HOM05D007220 ORTHO05D009058 4.7e-39 165.2 160 59.4
ClCG05G007450 Citrullus lanatus HOM05D007220 ORTHO05D009058 1.4e-38 163.7 190 54.2
Dinv28549 Davidia involucrata HOM05D007220 ORTHO05D009058 2.3e-38 162.9 205 50.7
SGA_v2.0_scaffold2G01175 Striga asiatica HOM05D007220 ORTHO05D009058 2.3e-38 162.9 192 52.1
CsaV3_3G016270 Cucumis sativus L. HOM05D007220 ORTHO05D009058 5.2e-38 161.8 184 54.3
Dinv22967 Davidia involucrata HOM05D007220 ORTHO05D009058 8.9e-38 161.0 213 55.4
Manes.14G034000 Manihot esculenta HOM05D007220 ORTHO05D009058 8.9e-38 161.0 198 52.5
Duzib205G1715 Durio zibethinus HOM05D007220 ORTHO05D009058 1.5e-37 160.2 137 63.5
MELO3C006826.2 Cucumis melo HOM05D007220 ORTHO05D009058 5.7e-37 158.3 190 52.6
Glyma.09G232600 Glycine max HOM05D007220 ORTHO05D009058 1.7e-36 156.8 133 62.4
Thecc.03G158900 Theobroma cacao HOM05D007220 ORTHO05D009058 1.7e-36 156.8 202 48.0
vmacro09892 Vaccinium macrocarpon HOM05D007220 ORTHO05D009058 4.9e-36 155.2 199 46.2
SalBow4G2286 Salvia bowleyana HOM05D007220 ORTHO05D009058 8.3e-36 154.5 110 72.7
Cpa.g.sc3.292 Carica papaya HOM05D007220 ORTHO05D009058 1.1e-35 154.1 199 48.2
COL.COLO4_14153 Corchorus olitorius HOM05D007220 ORTHO05D009058 1.4e-35 153.7 199 47.2
Gohir.D07G043100 Gossypium hirsutum HOM05D007220 ORTHO05D009058 1.8e-35 153.3 107 71.0
Gohir.A07G038900 Gossypium hirsutum HOM05D007220 ORTHO05D009058 3.2e-35 152.5 107 71.0
Gorai.001G046100 Gossypium raimondii HOM05D007220 ORTHO05D009058 3.2e-35 152.5 107 71.0
Actinidia25024 Actinidia chinensis HOM05D007220 ORTHO05D009058 7.0e-35 151.4 197 51.3
FAN06G4318 Fragaria x ananassa HOM05D007220 ORTHO05D009058 7.0e-35 151.4 134 59.7
THA.LOC104811513 Tarenaya hassleriana HOM05D007220 ORTHO05D009058 7.0e-35 151.4 188 52.1
CiPaw.04G061800 Carya illinoinensis HOM05D007220 ORTHO05D009058 9.2e-35 151.0 107 72.9
FvH4_7g27960 Fragaria vesca HOM05D007220 ORTHO05D009058 9.2e-35 151.0 134 59.7
Migut.F00451 Erythranthe guttata HOM05D007220 ORTHO05D009058 1.2e-34 150.6 112 67.9
Cfa008220 Carpinus fangiana HOM05D007220 ORTHO05D009058 1.6e-34 150.2 186 50.0
PGR042G1708 Punica granatum HOM05D007220 ORTHO05D009058 1.6e-34 150.2 107 70.1
Nn4g26358 Nelumbo nucifera HOM05D007220 ORTHO05D009058 2.0e-34 149.8 200 47.5
QL09p019051 Quercus lobata HOM05D007220 ORTHO05D009058 2.0e-34 149.8 105 69.5
TWI39G1186 Tripterygium wilfordii HOM05D007220 ORTHO05D009058 2.7e-34 149.4 135 60.7
Ca_30916_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 3.5e-34 149.1 121 64.5
Sc19g0001910 Simmondsia chinensis HOM05D007220 ORTHO05D009058 3.5e-34 149.1 122 66.4
Aqoxy7G00673 Aquilegia oxysepala HOM05D007220 ORTHO05D009058 5.9e-34 148.3 128 60.2
FAN03G0488 Fragaria x ananassa HOM05D007220 ORTHO05D009058 5.9e-34 148.3 134 59.7
FAN03G2818 Fragaria x ananassa HOM05D007220 ORTHO05D009058 5.9e-34 148.3 134 59.7
Haze_13838 Corylus avellana HOM05D007220 ORTHO05D009058 7.8e-34 147.9 180 50.0
FAN10G3220 Fragaria x ananassa HOM05D007220 ORTHO05D009058 7.8e-34 147.9 134 59.7
Ciclev10005924m.g Citrus clementina HOM05D007220 ORTHO05D009058 2.3e-33 146.4 115 65.2
Eucgr.A02878 Eucalyptus grandis HOM05D007220 ORTHO05D009058 2.3e-33 146.4 200 47.5
FAN01G2832 Fragaria x ananassa HOM05D007220 ORTHO05D009058 3.0e-33 146.0 134 59.7
Sabra15G0142900 Salix brachista HOM05D007220 ORTHO05D009058 3.0e-33 146.0 101 73.3
arahy.Tifrunner.gnm1.ann1.0IXC5E Arachis hypogaea HOM05D007220 ORTHO05D009058 3.9e-33 145.6 110 66.4
RcHm_v2.0_Chr1g0374911 Rosa chinensis HOM05D007220 ORTHO05D009058 6.6e-33 144.8 134 57.5
BcaC01g06128 Brassica carinata HOM05D007220 ORTHO05D009058 1.1e-32 144.1 174 50.0
C03p18980 Brassica napus HOM05D007220 ORTHO05D009058 1.1e-32 144.1 174 50.0
BolC3t14287H Brassica oleracea HOM05D007220 ORTHO05D009058 1.1e-32 144.1 174 50.0
CSS0026352 Camellia sinensis var. sinensis HOM05D007220 ORTHO05D009058 1.1e-32 144.1 100 72.0
FAN06G0674 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.1e-32 144.1 134 58.2
EL10Ac3g05813 Beta vulgaris HOM05D007220 ORTHO05D009058 2.5e-32 142.9 132 59.8
Potri.015G129600 Populus trichocarpa HOM05D007220 ORTHO05D009058 3.3e-32 142.5 101 74.3
Rhsim09G0192800 Rhododendron simsii HOM05D007220 ORTHO05D009058 3.3e-32 142.5 130 56.2
VMungo1127G0384 Vigna mungo HOM05D007220 ORTHO05D009058 4.3e-32 142.1 109 66.1
MD01G1184500 Malus domestica HOM05D007220 ORTHO05D009058 5.6e-32 141.7 180 47.8
Atru.chr1.664 Acer truncatum HOM05D007220 ORTHO05D009058 7.3e-32 141.4 107 65.4
Lj8A39T34 Lonicera japonica HOM05D007220 ORTHO05D009058 7.3e-32 141.4 179 55.9
BraA03t10902Z Brassica rapa HOM05D007220 ORTHO05D009058 2.1e-31 139.8 161 51.6
AUR62016183 Chenopodium quinoa HOM05D007220 ORTHO05D009058 2.8e-31 139.4 195 47.7
Medtr4g035825 Medicago truncatula HOM05D007220 ORTHO05D009058 1.8e-30 136.7 165 46.1
Phvul.011G004500 Phaseolus vulgaris HOM05D007220 ORTHO05D009058 6.8e-30 134.8 136 58.8
AL8G25850 Arabidopsis lyrata HOM05D007220 ORTHO05D009058 1.5e-29 133.7 198 46.0
AT5G51545 Arabidopsis thaliana HOM05D007220 ORTHO05D009058 1.3e-28 130.6 199 45.2
CARHR264320 Cardamine hirsuta HOM05D007220 ORTHO05D009058 1.7e-28 130.2 107 61.7
BcaB01g04168 Brassica carinata HOM05D007220 ORTHO05D009058 2.9e-28 129.4 174 46.6
A03p16110 Brassica napus HOM05D007220 ORTHO05D009058 2.9e-28 129.4 102 61.8
CDE09G0763 Ceratophyllum demersum HOM05D007220 ORTHO05D009058 3.7e-28 129.0 133 54.9
Psat7g150000 Pisum sativum HOM05D007220 ORTHO05D009058 3.7e-28 129.0 132 52.3
Sp6g13740 Schrenkiella parvula HOM05D007220 ORTHO05D009058 3.7e-28 129.0 190 44.7
Lj3g0016008 Lotus japonicus HOM05D007220 ORTHO05D009058 6.4e-28 128.3 127 54.3
ECA233G2338 Erigeron canadensis HOM05D007220 ORTHO05D009058 2.4e-27 126.3 129 55.8
Carub.0008s1158 Capsella rubella HOM05D007220 ORTHO05D009058 7.0e-27 124.8 196 44.4
Zm00001eb230760 Zea mays HOM05D007220 ORTHO05D009058 1.6e-26 123.6 142 51.4
Aa31LG3G7960 Aethionema arabicum HOM05D007220 ORTHO05D009058 7.8e-26 121.3 108 59.3
HPP92_002073 Vanilla planifolia HOM05D007220 ORTHO05D009058 1.7e-25 120.2 103 57.3
PSO782G3417 Papaver somniferum HOM05D007220 ORTHO05D009058 6.6e-25 118.2 114 54.4
SEGI_29714 Sequoiadendron giganteum HOM05D007220 ORTHO05D009058 2.5e-24 116.3 124 55.6
PSO478G4327 Papaver somniferum HOM05D007220 ORTHO05D009058 3.3e-24 115.9 114 52.6
arahy.Tifrunner.gnm1.ann1.83G6QR Arachis hypogaea HOM05D007220 ORTHO05D009058 3.6e-23 112.5 86 65.1
ATR0730G016 Amborella trichopoda HOM05D007220 ORTHO05D009058 3.4e-21 105.9 114 51.8
TPR.G15117 Trifolium pratense HOM05D007220 ORTHO05D009058 9.2e-19 97.8 68 67.6
AUR62035102 Chenopodium quinoa HOM05D007220 ORTHO05D009058 4.6e-18 95.5 195 39.0
Potri.012G128000 Populus trichocarpa HOM05D007220 ORTHO05D009058 6.6e-17 91.7 100 53.0
AagrBONN_evm.TU.Sc2ySwM_228.5821 Anthoceros agrestis HOM05D007220 ORTHO05D009058 7.3e-16 88.2 109 45.0
Pp3c26_11240 Physcomitrium patens HOM05D007220 ORTHO05D009058 1.2e-15 87.4 120 43.3
DCAR_009422 Daucus carota HOM05D007220 ORTHO05D009058 1.6e-15 87.0 143 43.4
DCAR_009423 Daucus carota HOM05D007220 ORTHO05D009058 1.6e-15 87.0 143 43.4
HanXRQChr04g0107801 Helianthus annuus HOM05D000901 ORTHO05D001160 2.3e-14 83.2 135 41.5
MD07G1256600 Malus domestica HOM05D007220 ORTHO05D009058 6.8e-14 81.6 53 69.8
MBI12_g20320_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 9.9e-13 77.8 44 79.5
TAR629G2293 Trochodendron aralioides HOM05D007220 ORTHO05D009058 1.3e-12 77.4 92 50.0
Ca_20051_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 2.4e-11 73.2 79 53.2
Prupe.2G280700 Prunus persica HOM05D007220 ORTHO05D009058 3.2e-11 72.8 140 37.1
Mapoly0002s0242 Marchantia polymorpha HOM05D007220 ORTHO05D009058 4.1e-11 72.4 85 47.1
Sed0003033 Sechium edule HOM05D007220 ORTHO05D009058 9.2e-11 71.2 150 40.7
MBI12_g14970_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 4.3e-08 62.4 61 59.0
MBI12_g25331_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 4.7e-07 58.9 63 55.6


User provided reference genes

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