Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g081330.1 Solanum lycopersicum HOM05D008837 ORTHO05D006961 2.4e-44 181.8 93 100.0
Sopen03g022050 Solanum pennellii HOM05D008837 ORTHO05D006961 8.9e-39 163.3 93 94.6
PGSC0003DMG400043889 Solanum tuberosum HOM05D008837 ORTHO05D006961 8.9e-31 136.7 104 75.0
PGSC0003DMG400003216 Solanum tuberosum HOM05D008837 ORTHO05D006961 8.1e-24 113.6 100 65.0
Nitab4.5_0000319g0150 Nicotiana tabacum HOM05D008837 ORTHO05D006961 9.9e-22 106.7 100 64.0
Nitab4.5_0005040g0030 Nicotiana tabacum HOM05D008837 ORTHO05D006961 7.1e-20 100.5 101 58.4
Nitab4.5_0000319g0160 Nicotiana tabacum HOM05D008837 ORTHO05D006961 1.6e-19 99.4 98 60.2
Solyc03g082350.2 Solanum lycopersicum HOM05D008837 ORTHO05D006961 6.0e-19 97.4 102 57.8
Sopen03g022070 Solanum pennellii HOM05D008837 ORTHO05D006961 6.0e-19 97.4 104 57.7
PGSC0003DMG400003217 Solanum tuberosum HOM05D008837 ORTHO05D006961 1.6e-16 89.4 94 58.5
Nitab4.5_0014067g0010 Nicotiana tabacum HOM05D008837 ORTHO05D006961 1.8e-15 85.9 94 54.3
Nitab4.5_0000319g0090 Nicotiana tabacum HOM05D008837 ORTHO05D006961 5.2e-15 84.3 100 55.0
Nitab4.5_0000319g0100 Nicotiana tabacum HOM05D008837 ORTHO05D006961 3.8e-13 78.2 81 61.7
Sabra15G0003300 Salix brachista HOM05D008837 ORTHO05D006961 1.9e-12 75.9 97 50.5
Cc00_g29530 Coffea canephora HOM05D008837 ORTHO05D011237 3.2e-12 75.1 116 44.8
Oeu061026.1 Olea europaea HOM05D008837 ORTHO05D006961 5.4e-12 74.3 90 46.7
Peaxi162Scf00300g00088 Petunia axillaris HOM05D008837 ORTHO05D006961 9.3e-12 73.6 101 48.5
Potri.015G004800 Populus trichocarpa HOM05D008837 ORTHO05D011237 1.2e-11 73.2 97 48.5
Rhsim03G0215000 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.6e-11 72.8 105 44.8
Hma1.2p1_0415F.1_g148160 Hydrangea macrophylla HOM05D008837 ORTHO05D006961 2.7e-11 72.0 99 46.5
CSS0023145 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 3.5e-11 71.6 91 50.5
Peaxi162Scf00300g00087 Petunia axillaris HOM05D008837 ORTHO05D006961 3.5e-11 71.6 94 45.7
Sopen03g022090 Solanum pennellii HOM05D008837 ORTHO05D006961 4.6e-11 71.2 95 50.5
CSS0022315 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 2.3e-10 68.9 91 49.5
PGR042G1156 Punica granatum HOM05D008837 ORTHO05D011237 3.0e-10 68.6 98 45.9
Eucgr.A01407 Eucalyptus grandis HOM05D008837 ORTHO05D011237 6.6e-10 67.4 94 46.8
Manes.05G197800 Manihot esculenta HOM05D008837 ORTHO05D011237 1.1e-09 66.6 91 42.9
Cpa.g.sc37.99 Carica papaya HOM05D008613 ORTHO05D006961 1.5e-09 66.2 89 44.9
Eucgr.A01409 Eucalyptus grandis HOM05D008837 ORTHO05D011237 1.5e-09 66.2 94 44.7
DCAR_020368 Daucus carota HOM05D008837 ORTHO05D006961 1.9e-09 65.9 90 42.2
Oeu023688.1 Olea europaea HOM05D008613 ORTHO05D006961 3.3e-09 65.1 88 46.6
Solyc03g082370.1 Solanum lycopersicum HOM05D008837 ORTHO05D006961 3.3e-09 65.1 94 46.8
Thecc.03G217500 Theobroma cacao HOM05D008613 ORTHO05D006961 3.3e-09 65.1 88 45.5
Actinidia08695 Actinidia chinensis HOM05D008837 ORTHO05D006961 7.3e-09 63.9 94 46.8
Atru.chr12.2412 Acer truncatum HOM05D008837 ORTHO05D011237 9.6e-09 63.5 93 46.2
Dinv29215 Davidia involucrata HOM05D008837 ORTHO05D006961 9.6e-09 63.5 95 45.3
Potri.001G449800 Populus trichocarpa HOM05D008613 ORTHO05D006961 1.3e-08 63.2 88 43.2
Potri.001G449900 Populus trichocarpa HOM05D008613 ORTHO05D006961 1.3e-08 63.2 88 43.2
Potri.001G450000 Populus trichocarpa HOM05D008613 ORTHO05D006961 1.6e-08 62.8 88 43.2
Sabra16G0303700 Salix brachista HOM05D008613 ORTHO05D006961 2.1e-08 62.4 89 41.6
Atru.chr9.1866 Acer truncatum HOM05D008613 ORTHO05D006961 2.8e-08 62.0 93 43.0
DCAR_008982 Daucus carota HOM05D008837 ORTHO05D006961 2.8e-08 62.0 96 46.9
Duzib205G1426 Durio zibethinus HOM05D018669 ORTHO05D011237 2.8e-08 62.0 91 40.7
THA.LOC104815392 Tarenaya hassleriana HOM05D008703 ORTHO05D006961 2.8e-08 62.0 86 43.0
Thecc.03G208100 Theobroma cacao HOM05D018669 ORTHO05D011237 2.8e-08 62.0 91 44.0
Actinidia18679 Actinidia chinensis HOM05D008837 ORTHO05D006961 3.6e-08 61.6 97 41.2
Cpa.g.sc3.157 Carica papaya HOM05D008837 ORTHO05D011237 3.6e-08 61.6 90 38.9
TAR629G3181 Trochodendron aralioides HOM05D008613 ORTHO05D006961 3.6e-08 61.6 90 45.6
Gohir.A02G099100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 4.8e-08 61.2 89 42.7
Gohir.A09G186700 Gossypium hirsutum HOM05D018669 ORTHO05D011237 4.8e-08 61.2 91 39.6
Gohir.D03G084800 Gossypium hirsutum HOM05D008613 ORTHO05D006961 4.8e-08 61.2 89 42.7
Gohir.D08G121900 Gossypium hirsutum HOM05D008613 ORTHO05D006961 4.8e-08 61.2 88 46.6
Gorai.003G077900 Gossypium raimondii HOM05D008613 ORTHO05D006961 6.2e-08 60.8 89 42.7
Sabra16G0303600 Salix brachista HOM05D008613 ORTHO05D006961 6.2e-08 60.8 89 40.4
Sabra16G0303800 Salix brachista HOM05D008613 ORTHO05D006961 6.2e-08 60.8 89 40.4
Sabra16G0303500 Salix brachista HOM05D008613 ORTHO05D006961 8.1e-08 60.5 89 40.4
Duzib205G1760 Durio zibethinus HOM05D008613 ORTHO05D006961 1.1e-07 60.1 89 43.8
Gorai.004G128500 Gossypium raimondii HOM05D008613 ORTHO05D006961 1.1e-07 60.1 88 45.5
Potri.012G021602 Populus trichocarpa HOM05D008837 ORTHO05D006961 1.1e-07 60.1 94 40.4
Oeu023687.1 Olea europaea HOM05D008613 ORTHO05D006961 1.4e-07 59.7 91 40.7
Nitab4.5_0005040g0040 Nicotiana tabacum HOM05D008837 ORTHO05D006961 1.8e-07 59.3 50 66.0
Gohir.A08G109100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 2.4e-07 58.9 88 44.3
vmacro11487 Vaccinium macrocarpon HOM05D008613 ORTHO05D006961 2.4e-07 58.9 100 42.0
DCAR_008981 Daucus carota HOM05D008837 ORTHO05D011237 3.1e-07 58.5 95 44.2
Gorai.006G203600 Gossypium raimondii HOM05D018669 ORTHO05D011237 3.1e-07 58.5 95 40.0
DCAR_020369 Daucus carota HOM05D008837 ORTHO05D011237 4.0e-07 58.2 89 41.6
TWI15G0337 Tripterygium wilfordii HOM05D008613 ORTHO05D006961 5.3e-07 57.8 92 38.0
COL.COLO4_14365 Corchorus olitorius HOM05D018669 ORTHO05D011237 6.9e-07 57.4 89 42.7
vmacro06438 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 6.9e-07 57.4 98 38.8
Nn1g00438 Nelumbo nucifera HOM05D008613 ORTHO05D006961 1.2e-06 56.6 93 45.2
Prupe.5G133100 Prunus persica HOM05D008613 ORTHO05D006961 1.2e-06 56.6 87 39.1
Sabra16G0303900 Salix brachista HOM05D008613 ORTHO05D006961 1.5e-06 56.2 94 39.4
Aa31LG6G7520 Aethionema arabicum HOM05D008703 ORTHO05D006961 2.0e-06 55.8 88 40.9
AT5G54165 Arabidopsis thaliana HOM05D011561 ORTHO05D011237 2.0e-06 55.8 90 41.1
Ciclev10023060m.g Citrus clementina HOM05D008837 ORTHO05D006961 2.6e-06 55.5 93 39.8
EL10Ac3g05185 Beta vulgaris HOM05D008837 ORTHO05D006961 3.4e-06 55.1 95 38.9
Thhalv10009742m.g Eutrema salsugineum HOM05D008703 ORTHO05D006961 3.4e-06 55.1 85 41.2
Glyma.06G135900 Glycine max HOM05D012585 ORTHO05D015068 3.4e-06 55.1 88 36.4
A05p24420 Brassica napus HOM05D008703 ORTHO05D006961 5.8e-06 54.3 85 38.8
BolC5t32543H Brassica oleracea HOM05D008703 ORTHO05D006961 5.8e-06 54.3 85 38.8
BraA05t21333Z Brassica rapa HOM05D008703 ORTHO05D006961 5.8e-06 54.3 85 38.8
COL.COLO4_10830 Corchorus olitorius HOM05D008613 ORTHO05D006961 5.8e-06 54.3 89 39.3
Thhalv10015156m.g Eutrema salsugineum HOM05D011561 ORTHO05D011237 7.6e-06 53.9 90 42.2
Ah.07g204750 Amaranthus hybridus HOM05D011561 ORTHO05D011237 9.9e-06 53.5 91 36.3
Dinv06444 Davidia involucrata HOM05D002018 ORTHO05D002179 9.9e-06 53.5 93 41.9
Gohir.D09G181600 Gossypium hirsutum HOM05D018669 ORTHO05D011237 9.9e-06 53.5 95 38.9
Sp1g28080 Schrenkiella parvula HOM05D008703 ORTHO05D006961 9.9e-06 53.5 85 42.4


User provided reference genes

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