Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g080130.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.3e-71 270.4 131 100.0
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-50 203.4 138 76.1
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-50 203.4 138 76.1
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-50 203.4 138 76.1
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-50 203.4 138 76.1
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-50 203.4 138 76.1
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-50 203.4 138 76.1
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 8.6e-48 193.7 138 73.2
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 8.6e-48 193.7 138 73.2
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 4.3e-47 191.4 138 72.5
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 4.3e-47 191.4 138 72.5
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 4.3e-47 191.4 138 72.5
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 5.6e-47 191.0 101 91.1
CAN.G413.6 Capsicum annuum HOM05D000445 ORTHO05D000314 1.1e-45 186.8 145 68.3
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 5.2e-45 184.5 138 70.3
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 6.8e-45 184.1 129 72.9
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 6.8e-45 184.1 138 71.0
Sc25g0001980 Simmondsia chinensis HOM05D000445 ORTHO05D000314 6.8e-45 184.1 138 71.0
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.6e-44 182.2 138 70.3
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 4.4e-44 181.4 111 83.8
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 1.3e-43 179.9 139 68.3
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 1.3e-43 179.9 139 68.3
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 1.3e-43 179.9 139 68.3
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 1.7e-43 179.5 133 70.7
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr13g0418951 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-43 178.3 123 74.8
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 1.1e-42 176.8 138 68.8
HanXRQChr11g0336101 Helianthus annuus HOM05D000445 ORTHO05D000314 1.9e-42 176.0 123 74.0
HanXRQChr11g0336121 Helianthus annuus HOM05D000445 ORTHO05D000314 1.9e-42 176.0 123 74.0
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 1.9e-42 176.0 137 67.2
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 1.9e-42 176.0 137 67.2
Lsat_1_v5_gn_3_105620 Lactuca sativa HOM05D000445 ORTHO05D000314 4.2e-42 174.9 123 74.8
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 4.2e-42 174.9 123 74.8
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 4.2e-42 174.9 123 74.8
Lsat_1_v5_gn_9_18701 Lactuca sativa HOM05D000445 ORTHO05D000314 4.2e-42 174.9 123 74.8
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 9.3e-42 173.7 131 71.0
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 9.3e-42 173.7 131 71.0
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 9.3e-42 173.7 131 71.0
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 9.3e-42 173.7 138 66.7
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 9.3e-42 173.7 138 66.7
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.2e-41 173.3 135 66.7
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.2e-41 173.3 135 66.7
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.2e-41 173.3 135 66.7
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.2e-41 173.3 135 66.7
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.2e-41 173.3 135 66.7
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 1.2e-41 173.3 151 62.3
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 1.2e-41 173.3 161 59.6
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 1.2e-41 173.3 161 59.6
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 1.6e-41 172.9 138 66.7
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.1e-41 172.6 140 67.9
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 4.6e-41 171.4 131 70.2
BolSC29t60491H Brassica oleracea HOM05D000445 ORTHO05D000314 4.6e-41 171.4 131 70.2
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 4.6e-41 171.4 131 70.2
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 4.6e-41 171.4 131 70.2
BraSC138t45546Z Brassica rapa HOM05D000445 ORTHO05D000314 4.6e-41 171.4 131 70.2
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 4.6e-41 171.4 131 70.2
BraSC25t45893Z Brassica rapa HOM05D000445 ORTHO05D000314 4.6e-41 171.4 131 70.2
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 4.6e-41 171.4 139 67.6
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 6.0e-41 171.0 138 67.4
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 2.3e-40 169.1 138 64.5
HanXRQChr05g0152341 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-40 169.1 117 74.4
Nn070s42380 Nelumbo nucifera HOM05D000445 ORTHO05D000314 5.1e-40 167.9 140 66.4
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 1.1e-39 166.8 138 63.8
Nn233s45563 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.9e-39 166.0 134 67.9
Solyc09g031840.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.3e-39 165.2 111 76.6
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 1.8e-37 159.5 141 63.8
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 1.8e-37 159.5 141 63.8
Ah.10g029020 Amaranthus hybridus HOM05D000445 ORTHO05D000314 9.0e-37 157.1 113 70.8
Lsat_1_v5_gn_7_67161 Lactuca sativa HOM05D000445 ORTHO05D000314 4.2e-34 148.3 124 65.3
Nitab4.5_0000223g0190 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.2e-33 146.7 110 70.9
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 6.0e-33 144.4 111 71.2
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 3.0e-32 142.1 101 74.3
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 3.0e-32 142.1 101 74.3
Nitab4.5_0018503g0010 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.1e-32 141.4 109 69.7
Nitab4.5_0023562g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.6e-30 135.2 99 68.7
arahy.Tifrunner.gnm1.ann1.9A3TMW Arachis hypogaea HOM05D000445 ORTHO05D000314 9.0e-29 130.6 116 62.1
Lsat_1_v5_gn_9_42020 Lactuca sativa HOM05D000445 ORTHO05D000314 9.0e-29 130.6 101 69.3
Nitab4.5_0003101g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.2e-28 130.2 117 65.0
Nitab4.5_0004376g0100 Nicotiana tabacum HOM05D000445 ORTHO05D000314 7.6e-28 127.5 109 66.1
HanXRQChr11g0333801 Helianthus annuus HOM05D000445 ORTHO05D000314 3.8e-27 125.2 95 69.5
RcHm_v2.0_Chr2g0118441 Rosa chinensis HOM05D000445 ORTHO05D000314 1.4e-26 123.2 126 56.3
Lalb_Chr07g0191931 Lupinus albus HOM05D000445 ORTHO05D000314 2.4e-26 122.5 149 49.7
C04p22510 Brassica napus HOM05D000445 ORTHO05D000314 4.2e-26 121.7 103 65.0
BolSC47t61053H Brassica oleracea HOM05D000445 ORTHO05D000314 1.2e-25 120.2 92 68.5
HanXRQChr00c0533g0575551 Helianthus annuus HOM05D000445 ORTHO05D000314 1.6e-25 119.8 69 84.1
HanXRQChr00c0593g0576441 Helianthus annuus HOM05D000445 ORTHO05D000314 1.6e-25 119.8 69 84.1
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 3.5e-25 118.6 99 61.6
Nitab4.5_0001379g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.7e-24 114.0 91 65.9
Gohir.A02G069301 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.1e-23 113.6 69 79.7
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.3e-23 111.7 114 58.8
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.3e-23 111.7 114 58.8
Hund26852 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.3e-23 111.7 114 58.8
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.3e-23 111.7 114 58.8
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.3e-23 111.7 114 58.8
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.3e-23 111.7 114 58.8
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.3e-23 111.7 114 58.8
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.3e-23 111.7 114 58.8
Gorai.005G167600 Gossypium raimondii HOM05D000445 ORTHO05D000314 2.1e-22 109.4 116 52.6
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 4.0e-21 105.1 86 67.4
Gohir.D02G149651 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.2e-20 103.6 117 50.4
Solyc11g021063.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.0e-20 102.8 97 59.8
Solyc04g050840.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 5.8e-20 101.3 116 51.7
C09p24780 Brassica napus HOM05D000445 ORTHO05D000314 7.6e-20 100.9 62 82.3
BolSC44t60838H Brassica oleracea HOM05D000445 ORTHO05D000314 7.6e-20 100.9 62 82.3
Solyc00g500148.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.6e-20 100.9 82 64.6
EL10Ac2g04287 Beta vulgaris HOM05D000445 ORTHO05D000314 6.5e-19 97.8 63 79.4
Gohir.D10G110850 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.1e-18 97.1 66 71.2
Dinv39830 Davidia involucrata HOM05D000445 ORTHO05D000314 9.3e-18 94.0 51 86.3
Solyc02g014800.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-17 93.2 56 80.4
Solyc04g024540.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.1e-17 92.8 116 50.0
EL10As9g23920 Beta vulgaris HOM05D000445 ORTHO05D000314 4.6e-17 91.7 105 50.5
Oeu012817.1 Olea europaea HOM05D000445 ORTHO05D000314 7.9e-17 90.9 82 59.8
HanXRQChr00c0496g0575211 Helianthus annuus HOM05D000445 ORTHO05D000314 3.9e-16 88.6 75 62.7
Lsat_1_v5_gn_5_121240 Lactuca sativa HOM05D000445 ORTHO05D000314 3.9e-16 88.6 54 83.3
Sc02g0005240 Simmondsia chinensis HOM05D000445 ORTHO05D000314 6.7e-16 87.8 58 75.9
BolSC45t60924H Brassica oleracea HOM05D000445 ORTHO05D000314 1.3e-14 83.6 51 82.4
Oeu062872.1 Olea europaea HOM05D000445 ORTHO05D000314 1.6e-14 83.2 77 58.4
BolSC46t60973H Brassica oleracea HOM05D000445 ORTHO05D000314 6.3e-14 81.3 50 82.0
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 6.3e-14 81.3 43 83.7
EL10Ac1g00652 Beta vulgaris HOM05D000445 ORTHO05D000314 8.2e-14 80.9 39 94.9
Lsat_1_v5_gn_0_15540 Lactuca sativa HOM05D000445 ORTHO05D000314 1.1e-13 80.5 41 85.4
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.4e-13 79.3 37 97.3
HanXRQChr00c0585g0576231 Helianthus annuus HOM05D000445 ORTHO05D000314 4.1e-13 78.6 42 88.1
HanXRQChr10g0317961 Helianthus annuus HOM05D000445 ORTHO05D000314 4.1e-13 78.6 42 88.1
BolSC49t61128H Brassica oleracea HOM05D000445 ORTHO05D000314 9.0e-13 77.4 43 79.1
Oeu058356.1 Olea europaea HOM05D000445 ORTHO05D000314 9.0e-13 77.4 72 61.1
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 9.0e-13 77.4 109 43.1
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 9.0e-13 77.4 109 43.1
Nitab4.5_0027450g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.5e-12 76.6 67 61.2
Nitab4.5_0004573g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.6e-12 75.9 37 89.2
Nn020s41480 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.4e-12 75.5 42 81.0
Sc15g0001780 Simmondsia chinensis HOM05D001387 ORTHO05D001250 4.5e-12 75.1 54 74.1
Medtr8g024820 Medicago truncatula HOM05D000445 ORTHO05D000314 5.9e-12 74.7 138 41.3
Sed0022464 Sechium edule HOM05D000445 ORTHO05D000314 5.9e-12 74.7 72 54.2
Nn2g12581 Nelumbo nucifera HOM05D000806 ORTHO05D002320 7.6e-12 74.3 37 91.9
Hund19326 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.3e-11 73.6 102 49.0
arahy.Tifrunner.gnm1.ann1.R6YYA0 Arachis hypogaea HOM05D000445 ORTHO05D000314 2.9e-11 72.4 71 53.5
Gorai.011G122200 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.9e-10 69.7 49 71.4
Sed0005242 Sechium edule HOM05D000445 ORTHO05D000314 4.2e-10 68.6 47 72.3
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 5.5e-10 68.2 116 40.5
Lalb_Chr01g0014981 Lupinus albus HOM05D000445 ORTHO05D000314 2.7e-09 65.9 37 83.8
Oeu045554.1 Olea europaea HOM05D000445 ORTHO05D000314 6.1e-09 64.7 65 55.4
Sabra06G0166200 Salix brachista HOM05D007555 ORTHO05D009521 6.1e-09 64.7 36 80.6
Medtr4g047930 Medicago truncatula HOM05D000445 ORTHO05D000314 7.9e-09 64.3 124 39.5
Lsat_1_v5_gn_7_82620 Lactuca sativa HOM05D001387 ORTHO05D001250 1.0e-08 63.9 35 80.0
Hund29199 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.3e-08 63.5 94 44.7
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 1.8e-08 63.2 47 66.0
Hund28275 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.9e-08 62.0 49 69.4
Hund30102 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.9e-08 62.0 49 69.4
Psat0s2065g0040 Pisum sativum HOM05D000445 ORTHO05D000314 8.7e-08 60.8 140 38.6
Oeu015121.1 Olea europaea HOM05D000445 ORTHO05D000314 2.5e-07 59.3 71 42.3
arahy.Tifrunner.gnm1.ann1.DY3820 Arachis hypogaea HOM05D000445 ORTHO05D010986 7.4e-07 57.8 44 63.6
Nitab4.5_0002616g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.2e-06 56.2 42 66.7
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 3.7e-06 55.5 97 40.2
Nitab4.5_0001761g0270 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.8e-06 55.1 32 81.2
HPP92_027118 Vanilla planifolia HOM05D000445 ORTHO05D000314 6.3e-06 54.7 50 60.0


User provided reference genes

Program Settings