Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.1e-200 702.6 485 100.0
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.3e-170 603.6 493 83.6
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.4e-167 593.6 439 95.0
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.5e-132 476.5 501 67.9
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.1e-119 432.6 449 71.0
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.7e-115 419.1 461 71.4
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 3.6e-99 366.3 250 80.4
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.8e-98 364.0 508 54.9
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 6.0e-94 349.0 266 70.7
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.0e-93 348.2 421 56.1
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 3.0e-93 346.7 255 70.6
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 3.0e-93 346.7 499 57.5
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 8.6e-93 345.1 255 69.4
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.1e-92 344.7 252 74.2
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.9e-92 344.0 252 71.8
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.5e-92 343.6 242 72.7
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 5.6e-92 342.4 240 72.1
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 7.3e-92 342.0 255 70.2
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.2e-91 341.3 477 52.2
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 1.6e-91 340.9 251 68.5
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.6e-91 340.9 251 68.9
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.6e-91 340.9 251 68.5
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.6e-91 340.9 251 69.3
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.8e-91 340.1 505 56.2
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 4.7e-91 339.3 256 69.1
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 4.7e-91 339.3 245 71.8
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 8.0e-91 338.6 241 72.6
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.4e-90 337.8 252 70.6
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 1.4e-90 337.8 251 68.1
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 5.2e-90 335.9 248 68.1
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 6.8e-90 335.5 251 67.3
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.2e-89 334.7 523 50.3
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.5e-89 334.3 490 52.4
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 1.5e-89 334.3 244 70.9
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 1.5e-89 334.3 498 54.8
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 3.4e-89 333.2 251 67.3
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 3.4e-89 333.2 251 68.1
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 4.4e-89 332.8 249 68.7
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 5.8e-89 332.4 256 66.8
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 5.8e-89 332.4 256 66.8
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 5.8e-89 332.4 256 66.8
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 5.8e-89 332.4 496 49.2
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 5.8e-89 332.4 252 66.7
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 7.5e-89 332.0 248 67.7
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 9.8e-89 331.6 256 66.4
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 9.8e-89 331.6 255 70.6
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.3e-88 331.3 501 45.1
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 1.3e-88 331.3 254 68.1
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.7e-88 330.9 256 66.4
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.7e-88 330.9 242 70.7
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 2.2e-88 330.5 248 68.5
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.9e-88 330.1 495 51.5
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 4.9e-88 329.3 492 54.5
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 4.9e-88 329.3 256 66.0
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 4.9e-88 329.3 256 66.0
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 4.9e-88 329.3 453 50.8
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 6.4e-88 328.9 239 71.1
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 8.3e-88 328.6 253 68.4
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.4e-87 327.8 254 67.3
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 1.9e-87 327.4 241 67.6
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.4e-87 327.0 247 68.4
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 2.4e-87 327.0 487 54.0
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.2e-87 326.6 265 63.4
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 3.2e-87 326.6 249 66.7
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 3.2e-87 326.6 249 66.7
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 5.4e-87 325.9 490 52.9
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 7.0e-87 325.5 247 70.0
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 7.0e-87 325.5 495 45.1
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 9.2e-87 325.1 250 66.8
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.1e-86 323.9 257 66.5
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 2.7e-86 323.6 431 52.7
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 2.7e-86 323.6 238 68.9
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.7e-86 323.6 416 57.9
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 4.6e-86 322.8 486 47.3
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 6.0e-86 322.4 254 65.4
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.0e-85 321.6 251 66.5
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.0e-85 321.6 250 64.0
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.0e-85 321.6 248 66.9
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.3e-85 321.2 248 68.5
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 2.3e-85 320.5 250 67.2
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.0e-85 320.1 245 70.2
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 3.0e-85 320.1 252 66.3
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 3.9e-85 319.7 507 50.9
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 8.6e-85 318.5 260 64.6
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 8.6e-85 318.5 254 64.2
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 1.5e-84 317.8 494 50.8
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 2.5e-84 317.0 253 64.0
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 3.3e-84 316.6 505 48.5
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 5.6e-84 315.8 488 45.3
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 9.5e-84 315.1 496 45.8
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.2e-83 314.7 257 66.9
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 2.1e-83 313.9 255 66.3
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.6e-83 313.2 524 49.8
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 3.6e-83 313.2 488 49.2
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 3.6e-83 313.2 357 52.7
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 1.5e-81 307.8 448 50.2
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 1.5e-81 307.8 488 51.2
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.8e-81 305.8 254 63.8
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.8e-81 305.8 253 63.6
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 9.9e-81 305.1 244 66.0
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 2.9e-80 303.5 255 63.9
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 2.9e-80 303.5 454 50.7
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 2.9e-80 303.5 250 63.2
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 2.4e-79 300.4 481 47.2
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 4.1e-79 299.7 253 62.8
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.0e-77 295.0 245 60.8
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.3e-77 294.7 242 61.2
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 2.5e-76 290.4 247 63.6
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 2.5e-76 290.4 257 58.0
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 2.5e-76 290.4 470 43.0
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 2.1e-75 287.3 213 70.0
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 2.8e-75 287.0 231 62.3
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 3.6e-75 286.6 258 60.5
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.1e-74 285.0 233 63.1
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 8.7e-69 265.4 243 59.3
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.9e-68 264.2 221 57.9
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 6.2e-67 259.2 478 47.5
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 9.0e-58 228.8 243 48.6
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 6.0e-54 216.1 256 45.7
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 8.7e-45 185.7 248 41.9
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 4.3e-44 183.3 246 42.3
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 7.4e-44 182.6 231 42.4
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.4e-42 177.6 507 41.2
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 2.9e-40 170.6 229 38.9
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 2.5e-36 157.5 112 68.8
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 7.4e-36 156.0 247 36.0
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 5.3e-34 149.8 254 35.8
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 3.4e-33 147.1 133 59.4
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 2.9e-32 144.1 213 38.0
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.5e-28 131.7 219 33.3
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 8.2e-27 125.9 207 31.4
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 1.1e-26 125.6 87 66.7
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 5.3e-26 123.2 227 34.8
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.5e-25 121.7 315 50.2
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 9.4e-23 112.5 222 31.5
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 2.1e-22 111.3 147 40.1
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 3.6e-22 110.5 224 31.2
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.7e-19 101.7 220 32.7
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 6.3e-19 99.8 333 42.6
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 2.1e-14 84.7 126 41.3
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 3.0e-13 80.9 131 38.2
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 5.7e-12 76.6 67 52.2
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 3.7e-11 73.9 97 42.3
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 6.3e-11 73.2 108 38.0
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 1.1e-10 72.4 43 69.8
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 2.4e-10 71.2 89 42.7
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.6e-09 68.6 186 30.1
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 3.5e-09 67.4 61 52.5
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 4.5e-09 67.0 55 49.1
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 2.2e-08 64.7 130 33.8
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 5.5e-07 60.1 132 29.5


User provided reference genes

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