Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g078320.1 Solanum lycopersicum HOM05D000324 ORTHO05D390192 1.6e-24 115.2 54 100.0
Solyc08g008310.3 Solanum lycopersicum HOM05D000324 ORTHO05D001014 6.3e-13 76.6 38 86.8
Sopen08g004170 Solanum pennellii HOM05D000324 ORTHO05D001014 6.3e-13 76.6 38 86.8
Nitab4.5_0002944g0020 Nicotiana tabacum HOM05D000324 ORTHO05D001014 1.8e-12 75.1 38 81.6
Nitab4.5_0007367g0030 Nicotiana tabacum HOM05D000324 ORTHO05D001014 4.1e-12 73.9 38 78.9
Peaxi162Scf00074g00929 Petunia axillaris HOM05D000324 ORTHO05D001014 2.3e-10 68.2 38 68.4
CAN.G532.119 Capsicum annuum HOM05D000324 ORTHO05D001014 6.6e-10 66.6 38 65.8
CAN.G792.40 Capsicum annuum HOM05D000324 ORTHO05D001014 1.5e-09 65.5 37 70.3
Nitab4.5_0001231g0100 Nicotiana tabacum HOM05D000324 ORTHO05D001014 1.5e-09 65.5 38 65.8
Nitab4.5_0005537g0020 Nicotiana tabacum HOM05D000324 ORTHO05D001014 1.5e-09 65.5 38 65.8
Actinidia27318 Actinidia chinensis HOM05D000324 ORTHO05D001014 2.5e-09 64.7 37 70.3
CSS0016601 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D001014 5.6e-09 63.5 38 68.4
Solyc08g082280.4 Solanum lycopersicum HOM05D000324 ORTHO05D001014 7.3e-09 63.2 38 60.5
Sopen08g030550 Solanum pennellii HOM05D000324 ORTHO05D001014 7.3e-09 63.2 38 60.5
Oeu054021.2 Olea europaea HOM05D000324 ORTHO05D001014 2.1e-08 61.6 38 65.8
MSTRG.1807 Avicennia marina HOM05D000324 ORTHO05D001014 3.6e-08 60.8 38 60.5
Sc26g0000680 Simmondsia chinensis HOM05D000324 ORTHO05D001014 3.6e-08 60.8 38 63.2
vmacro13899 Vaccinium macrocarpon HOM05D000324 ORTHO05D001014 3.6e-08 60.8 38 63.2
Lalb_Chr09g0332501 Lupinus albus HOM05D000324 ORTHO05D001014 6.1e-08 60.1 38 60.5
Os01g0681200 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D001014 6.1e-08 60.1 38 60.5
Dinv37533 Davidia involucrata HOM05D000324 ORTHO05D001014 8.0e-08 59.7 37 62.2
Nn1g01879 Nelumbo nucifera HOM05D000324 ORTHO05D001014 8.0e-08 59.7 38 60.5
unitig_32.g11615 Utricularia gibba HOM05D000324 ORTHO05D001014 8.0e-08 59.7 38 57.9
Actinidia22154 Actinidia chinensis HOM05D000324 ORTHO05D001014 1.0e-07 59.3 38 63.2
Lj8A208T61 Lonicera japonica HOM05D000324 ORTHO05D001014 1.0e-07 59.3 37 64.9
SGA_v2.0_scaffold111G31413 Striga asiatica HOM05D000324 ORTHO05D001014 1.0e-07 59.3 38 57.9
Ca_24514_v3 Cicer arietinum L. HOM05D000324 ORTHO05D001014 1.4e-07 58.9 38 60.5
Manes.02G010300 Manihot esculenta HOM05D000324 ORTHO05D001014 1.4e-07 58.9 38 57.9
TWI15G0387 Tripterygium wilfordii HOM05D000324 ORTHO05D001014 1.4e-07 58.9 33 72.7
Zm00001eb156650 Zea mays HOM05D000324 ORTHO05D001014 1.4e-07 58.9 38 57.9
MSTRG.11926 Avicennia marina HOM05D000324 ORTHO05D001014 1.8e-07 58.5 39 56.4
CSS0005118 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D001014 1.8e-07 58.5 38 60.5
CSS0007356 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D001014 1.8e-07 58.5 38 60.5
CSS0021276 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D001014 1.8e-07 58.5 38 60.5
CSS0047947 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D010724 1.8e-07 58.5 38 60.5
Dinv38834 Davidia involucrata HOM05D000324 ORTHO05D001014 1.8e-07 58.5 38 63.2
Eucgr.D01734 Eucalyptus grandis HOM05D000324 ORTHO05D001014 1.8e-07 58.5 31 77.4
Gohir.D12G237450 Gossypium hirsutum HOM05D000324 ORTHO05D048155 1.8e-07 58.5 37 67.6
Gorai.008G254100 Gossypium raimondii HOM05D000324 ORTHO05D048155 1.8e-07 58.5 37 67.6
Lsat_1_v5_gn_3_139941 Lactuca sativa HOM05D000324 ORTHO05D001014 1.8e-07 58.5 37 62.2
Lj2C168G9 Lonicera japonica HOM05D000324 ORTHO05D001014 1.8e-07 58.5 38 60.5
PSO063G2527 Papaver somniferum HOM05D000324 ORTHO05D001014 1.8e-07 58.5 38 63.2
PSO170G0164 Papaver somniferum HOM05D000324 ORTHO05D001014 1.8e-07 58.5 38 63.2
Rhsim07G0082500 Rhododendron simsii HOM05D000324 ORTHO05D001014 1.8e-07 58.5 38 60.5
BcaB05g23865 Brassica carinata HOM05D000324 ORTHO05D001014 2.3e-07 58.2 37 59.5
TWI81G0354 Tripterygium wilfordii HOM05D000324 ORTHO05D001014 2.3e-07 58.2 38 60.5
TAR629G0782 Trochodendron aralioides HOM05D000324 ORTHO05D001014 2.3e-07 58.2 38 60.5
Duzib084G0630 Durio zibethinus HOM05D000324 ORTHO05D001014 3.1e-07 57.8 37 64.9
Hma1.2p1_0139F.1_g063360 Hydrangea macrophylla HOM05D000324 ORTHO05D001014 4.0e-07 57.4 33 69.7
Thecc.03G297300 Theobroma cacao HOM05D000324 ORTHO05D001014 4.0e-07 57.4 37 62.2
VMungo0251G1786 Vigna mungo HOM05D000324 ORTHO05D001014 4.0e-07 57.4 31 67.7
MSTRG.25671 Avicennia marina HOM05D000324 ORTHO05D001014 5.2e-07 57.0 38 60.5
CiPaw.11G121800 Carya illinoinensis HOM05D000324 ORTHO05D001014 5.2e-07 57.0 38 57.9
Cc08_g16030 Coffea canephora HOM05D000324 ORTHO05D001014 5.2e-07 57.0 38 60.5
HanXRQChr03g0093411 Helianthus annuus HOM05D000324 ORTHO05D001014 5.2e-07 57.0 37 59.5
MD06G1106100 Malus domestica HOM05D000324 ORTHO05D001014 5.2e-07 57.0 38 60.5
QL02p030738 Quercus lobata HOM05D000324 ORTHO05D001014 5.2e-07 57.0 37 62.2
Sc22g0005010 Simmondsia chinensis HOM05D000324 ORTHO05D001014 5.2e-07 57.0 38 55.3
Glyma.01G225200 Glycine max HOM05D000324 ORTHO05D001014 6.8e-07 56.6 38 57.9
Glyma.11G017900 Glycine max HOM05D000324 ORTHO05D001014 6.8e-07 56.6 38 57.9
HanXRQChr07g0190911 Helianthus annuus HOM05D000324 ORTHO05D001014 6.8e-07 56.6 38 57.9
MD14G1128200 Malus domestica HOM05D000324 ORTHO05D001014 6.8e-07 56.6 38 57.9
PSO782G0506 Papaver somniferum HOM05D000324 ORTHO05D001014 6.8e-07 56.6 38 55.3
Hund27203 Selenicereus undatus HOM05D000324 ORTHO05D001014 6.8e-07 56.6 31 67.7
SGA_v2.0_scaffold305G47968 Striga asiatica HOM05D000324 ORTHO05D001014 6.8e-07 56.6 38 60.5
GSVIVG01019527001 Vitis vinifera HOM05D000324 ORTHO05D001014 6.8e-07 56.6 38 60.5
Aa31LG6G7060 Aethionema arabicum HOM05D000324 ORTHO05D001014 8.9e-07 56.2 37 56.8
BcaB01g01580 Brassica carinata HOM05D000324 ORTHO05D001014 8.9e-07 56.2 37 56.8
BcaC04g21095 Brassica carinata HOM05D000324 ORTHO05D001014 8.9e-07 56.2 37 56.8
A09p28200 Brassica napus HOM05D000324 ORTHO05D001014 8.9e-07 56.2 37 56.8
C09p35730 Brassica napus HOM05D000324 ORTHO05D001014 8.9e-07 56.2 37 56.8
BolC9t56408H Brassica oleracea HOM05D000324 ORTHO05D001014 8.9e-07 56.2 37 56.8
BraA09t38384Z Brassica rapa HOM05D000324 ORTHO05D001014 8.9e-07 56.2 37 56.8
Cpa.g.sc79.38 Carica papaya HOM05D000324 ORTHO05D001014 8.9e-07 56.2 31 71.0
DCAR_029887 Daucus carota HOM05D000324 ORTHO05D001014 8.9e-07 56.2 38 60.5
Duzib205G1533 Durio zibethinus HOM05D000324 ORTHO05D001014 8.9e-07 56.2 30 76.7
Gohir.D03G083000 Gossypium hirsutum HOM05D000324 ORTHO05D001014 8.9e-07 56.2 37 62.2
Prupe.5G118400 Prunus persica HOM05D000324 ORTHO05D001014 8.9e-07 56.2 38 55.3
TPR.G25571 Trifolium pratense HOM05D000324 ORTHO05D001014 8.9e-07 56.2 38 57.9
Atru.chr9.2000 Acer truncatum HOM05D000324 ORTHO05D001014 1.2e-06 55.8 37 62.2
Aqoxy7G00114 Aquilegia oxysepala HOM05D000324 ORTHO05D001014 1.2e-06 55.8 37 56.8
Dinv32579 Davidia involucrata HOM05D000324 ORTHO05D001014 1.2e-06 55.8 31 74.2
MBI07_g23928_MAGBIO Magnolia biondii HOM05D000324 ORTHO05D001014 1.2e-06 55.8 38 57.9
Os01g0655800 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D001014 1.2e-06 55.8 37 59.5
SalBow1G4222 Salvia bowleyana HOM05D000324 ORTHO05D001014 1.2e-06 55.8 38 57.9
Sp6g06430 Schrenkiella parvula HOM05D000324 ORTHO05D001014 1.2e-06 55.8 37 56.8
SGA_v2.0_scaffold96G28962 Striga asiatica HOM05D000324 ORTHO05D001014 1.2e-06 55.8 37 62.2
TAR375G0812 Trochodendron aralioides HOM05D000324 ORTHO05D001014 1.2e-06 55.8 38 57.9
CANSAT21G1790 Cannabis sativa HOM05D000324 ORTHO05D001014 1.5e-06 55.5 37 56.8
Migut.A00645 Erythranthe guttata HOM05D000324 ORTHO05D001014 1.5e-06 55.5 38 55.3
Psat2g185240 Pisum sativum HOM05D000324 ORTHO05D001014 1.5e-06 55.5 38 55.3
HPP92_022844 Vanilla planifolia HOM05D000324 ORTHO05D001014 1.5e-06 55.5 38 52.6
HPP92_026123 Vanilla planifolia HOM05D000324 ORTHO05D001014 1.5e-06 55.5 38 52.6
Zm00001eb158030 Zea mays HOM05D000324 ORTHO05D001014 1.5e-06 55.5 37 62.2
Duzib068G0416 Durio zibethinus HOM05D000324 ORTHO05D001014 2.0e-06 55.1 30 73.3
Gorai.003G080500 Gossypium raimondii HOM05D000324 ORTHO05D001014 2.0e-06 55.1 30 73.3
PGR031G0650 Punica granatum HOM05D000324 ORTHO05D001014 2.0e-06 55.1 31 64.5
Hund11390 Selenicereus undatus HOM05D000324 ORTHO05D001014 2.0e-06 55.1 38 57.9
AL7G29510 Arabidopsis lyrata HOM05D000324 ORTHO05D001014 2.6e-06 54.7 37 54.1
arahy.Tifrunner.gnm1.ann1.DHME93 Arachis hypogaea HOM05D000324 ORTHO05D001014 2.6e-06 54.7 38 47.4
arahy.Tifrunner.gnm1.ann1.Z40Q91 Arachis hypogaea HOM05D000324 ORTHO05D001014 2.6e-06 54.7 38 47.4
BcaC03g16375 Brassica carinata HOM05D000324 ORTHO05D001014 2.6e-06 54.7 37 56.8
A02p26400 Brassica napus HOM05D000324 ORTHO05D001014 2.6e-06 54.7 37 56.8
C02p41960 Brassica napus HOM05D000324 ORTHO05D001014 2.6e-06 54.7 37 56.8
BolC2t10228H Brassica oleracea HOM05D000324 ORTHO05D001014 2.6e-06 54.7 37 56.8
BraA02t07642Z Brassica rapa HOM05D000324 ORTHO05D001014 2.6e-06 54.7 37 56.8
CARHR255580 Cardamine hirsuta HOM05D000324 ORTHO05D001014 2.6e-06 54.7 37 56.8
Ciclev10019200m.g Citrus clementina HOM05D000324 ORTHO05D001014 2.6e-06 54.7 30 70.0
COL.COLO4_10695 Corchorus olitorius HOM05D000324 ORTHO05D001014 2.6e-06 54.7 37 56.8
MELO3C005749.2 Cucumis melo HOM05D000324 ORTHO05D001014 2.6e-06 54.7 39 56.4
CsaV3_5G002040 Cucumis sativus L. HOM05D000324 ORTHO05D001014 2.6e-06 54.7 39 56.4
DCAR_027703 Daucus carota HOM05D000324 ORTHO05D001014 2.6e-06 54.7 38 57.9
Thhalv10024614m.g Eutrema salsugineum HOM05D000324 ORTHO05D001014 2.6e-06 54.7 37 56.8
Gohir.A02G101300 Gossypium hirsutum HOM05D000324 ORTHO05D001014 2.6e-06 54.7 36 61.1
Medtr5g009350 Medicago truncatula HOM05D000324 ORTHO05D001014 2.6e-06 54.7 38 52.6
Sc01g0010290 Simmondsia chinensis HOM05D000324 ORTHO05D001014 2.6e-06 54.7 31 64.5
VMungo1215G2181 Vigna mungo HOM05D000324 ORTHO05D001014 2.6e-06 54.7 38 52.6
BcaNung01091 Brassica carinata HOM05D000324 ORTHO05D001014 3.4e-06 54.3 37 56.8
FvH4_5g04520 Fragaria vesca HOM05D000324 ORTHO05D001014 3.4e-06 54.3 38 55.3
FAN04G1574 Fragaria x ananassa HOM05D000324 ORTHO05D001014 3.4e-06 54.3 38 55.3
FAN08G0016 Fragaria x ananassa HOM05D000324 ORTHO05D001014 3.4e-06 54.3 38 55.3
FAN18G0980 Fragaria x ananassa HOM05D000324 ORTHO05D001014 3.4e-06 54.3 38 55.3
FAN18G4584 Fragaria x ananassa HOM05D000324 ORTHO05D001014 3.4e-06 54.3 38 55.3
Lj7C501T6 Lonicera japonica HOM05D000324 ORTHO05D001014 3.4e-06 54.3 31 67.7
Sp7g21800 Schrenkiella parvula HOM05D000324 ORTHO05D001014 3.4e-06 54.3 37 56.8
arahy.Tifrunner.gnm1.ann1.3LN7S1 Arachis hypogaea HOM05D000324 ORTHO05D001014 4.4e-06 53.9 31 67.7
arahy.Tifrunner.gnm1.ann1.H5SPYF Arachis hypogaea HOM05D000324 ORTHO05D001014 4.4e-06 53.9 31 67.7
arahy.Tifrunner.gnm1.ann1.NSEE4W Arachis hypogaea HOM05D000324 ORTHO05D001014 4.4e-06 53.9 31 67.7
BcaC09g50942 Brassica carinata HOM05D000324 ORTHO05D001014 4.4e-06 53.9 37 54.1
A01p15150 Brassica napus HOM05D000324 ORTHO05D001014 4.4e-06 53.9 37 54.1
C01p19050 Brassica napus HOM05D000324 ORTHO05D001014 4.4e-06 53.9 37 54.1
BolC1t01831H Brassica oleracea HOM05D000324 ORTHO05D001014 4.4e-06 53.9 37 54.1
BraA01t01453Z Brassica rapa HOM05D000324 ORTHO05D001014 4.4e-06 53.9 37 54.1
ClCG01G001900 Citrullus lanatus HOM05D000324 ORTHO05D001014 4.4e-06 53.9 39 56.4
Gohir.A11G025100 Gossypium hirsutum HOM05D000324 ORTHO05D001014 4.4e-06 53.9 30 66.7
Gohir.D11G024600 Gossypium hirsutum HOM05D000324 ORTHO05D001014 4.4e-06 53.9 30 66.7
Gorai.007G026300 Gossypium raimondii HOM05D000324 ORTHO05D001014 4.4e-06 53.9 30 66.7
Os06g0158000 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D001014 4.4e-06 53.9 31 67.7
Phvul.002G164000 Phaseolus vulgaris HOM05D000324 ORTHO05D001014 4.4e-06 53.9 38 50.0
Ah.05g179670 Amaranthus hybridus HOM05D000324 ORTHO05D001014 5.8e-06 53.5 30 63.3
Carub.0006s2980 Capsella rubella HOM05D000324 ORTHO05D001014 5.8e-06 53.5 30 66.7
Thhalv10029385m.g Eutrema salsugineum HOM05D000324 ORTHO05D001014 5.8e-06 53.5 37 51.4
FAN13G0790 Fragaria x ananassa HOM05D000324 ORTHO05D001014 5.8e-06 53.5 38 50.0
HanXRQChr13g0415231 Helianthus annuus HOM05D000324 ORTHO05D001014 5.8e-06 53.5 38 60.5
Oeu034336.1 Olea europaea HOM05D000324 ORTHO05D001014 5.8e-06 53.5 30 70.0
PSO541G1571 Papaver somniferum HOM05D000324 ORTHO05D001014 5.8e-06 53.5 37 56.8
PSO675G0699 Papaver somniferum HOM05D000324 ORTHO05D001014 5.8e-06 53.5 37 56.8
Hund14223 Selenicereus undatus HOM05D000324 ORTHO05D001014 5.8e-06 53.5 38 55.3
SEGI_26006 Sequoiadendron giganteum HOM05D000324 ORTHO05D001014 5.8e-06 53.5 37 54.1
vmacro13155 Vaccinium macrocarpon HOM05D000324 ORTHO05D001014 5.8e-06 53.5 31 64.5
EL10Ac1g00280 Beta vulgaris HOM05D000324 ORTHO05D001014 7.5e-06 53.1 31 67.7
CDE03G0318 Ceratophyllum demersum HOM05D000324 ORTHO05D001014 7.5e-06 53.1 38 55.3
CDE04G2930 Ceratophyllum demersum HOM05D000324 ORTHO05D001014 7.5e-06 53.1 38 55.3
AUR62004480 Chenopodium quinoa HOM05D000324 ORTHO05D001014 7.5e-06 53.1 31 61.3
DCAR_005043 Daucus carota HOM05D000324 ORTHO05D001014 7.5e-06 53.1 37 54.1
ECA240G0377 Erigeron canadensis HOM05D000324 ORTHO05D001014 7.5e-06 53.1 30 70.0
ECA240G2247 Erigeron canadensis HOM05D000324 ORTHO05D001014 7.5e-06 53.1 38 63.2
Manes.01G049330 Manihot esculenta HOM05D000324 ORTHO05D001014 7.5e-06 53.1 31 61.3
Os11g0558300 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D001014 7.5e-06 53.1 33 63.6
SMO145G0008 Selaginella moellendorffii HOM05D000324 ORTHO05D001014 7.5e-06 53.1 38 55.3
TAR374G0836 Trochodendron aralioides HOM05D000324 ORTHO05D001014 7.5e-06 53.1 38 55.3
TAR381G0521 Trochodendron aralioides HOM05D000324 ORTHO05D001014 7.5e-06 53.1 37 56.8
Ah.12g052530 Amaranthus hybridus HOM05D000324 ORTHO05D001014 9.8e-06 52.8 38 52.6
ATR0188G034 Amborella trichopoda HOM05D000324 ORTHO05D001014 9.8e-06 52.8 38 52.6
CARHR231230 Cardamine hirsuta HOM05D000324 ORTHO05D001014 9.8e-06 52.8 37 51.4
Lsat_1_v5_gn_6_12401 Lactuca sativa HOM05D000324 ORTHO05D001014 9.8e-06 52.8 37 54.1
Peaxi162Scf00786g00434 Petunia axillaris HOM05D000324 ORTHO05D001014 9.8e-06 52.8 31 64.5
Potri.003G139700 Populus trichocarpa HOM05D000324 ORTHO05D001014 9.8e-06 52.8 31 64.5
Sabra01G0068300 Salix brachista HOM05D000324 ORTHO05D001014 9.8e-06 52.8 31 64.5
Sabra03G0100800 Salix brachista HOM05D000324 ORTHO05D001014 9.8e-06 52.8 31 64.5
THA.LOC104802143 Tarenaya hassleriana HOM05D000324 ORTHO05D001014 9.8e-06 52.8 38 52.6


User provided reference genes

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