Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 1.1e-278 962.6 460 100.0
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 1.6e-274 948.7 460 98.9
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 8.7e-228 793.5 441 85.5
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 5.1e-196 688.0 578 64.0
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 2.6e-192 675.6 463 68.9
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 3.3e-187 658.7 464 65.9
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 2.7e-181 639.0 463 64.1
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 3.9e-180 635.2 461 64.0
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 6.7e-180 634.4 463 63.3
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 2.6e-179 632.5 462 64.1
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 2.2e-178 629.4 461 64.0
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 3.7e-178 628.6 459 65.1
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 2.4e-177 625.9 504 60.9
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 4.1e-177 625.2 460 64.1
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 1.2e-176 623.6 463 63.1
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 2.0e-176 622.9 463 63.7
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 1.6e-173 613.2 450 62.4
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 2.7e-173 612.5 461 61.6
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 2.3e-172 609.4 458 63.3
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 2.6e-171 605.9 470 61.1
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 2.2e-170 602.8 464 60.8
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 8.2e-170 600.9 458 62.0
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 1.4e-169 600.1 463 60.5
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 7.0e-169 597.8 464 60.3
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 1.2e-168 597.0 461 60.7
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 2.7e-168 595.9 466 60.1
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 7.7e-168 594.3 462 60.0
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 1.3e-167 593.6 458 59.2
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 3.8e-167 592.0 462 60.2
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 5.0e-167 591.7 459 59.9
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 5.0e-167 591.7 463 60.9
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 1.1e-166 590.5 459 59.0
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 5.5e-166 588.2 422 65.2
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 1.8e-164 583.2 468 59.2
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 2.3e-164 582.8 462 60.2
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 5.2e-164 581.6 462 60.0
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 1.2e-163 580.5 478 59.0
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.2e-163 580.5 478 58.8
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 1.2e-163 580.5 477 58.7
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 3.4e-163 578.9 458 60.5
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 3.7e-162 575.5 434 62.0
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 3.1e-161 572.4 457 59.3
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 3.1e-161 572.4 477 57.4
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 4.1e-161 572.0 460 57.6
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 5.4e-161 571.6 461 57.7
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 5.4e-161 571.6 461 57.7
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 9.1e-161 570.9 459 57.3
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 1.6e-160 570.1 463 57.2
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 2.0e-160 569.7 462 57.4
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 3.5e-160 568.9 495 55.2
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 1.3e-159 567.0 462 56.9
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 5.0e-159 565.1 467 57.0
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 1.1e-158 563.9 416 63.9
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 1.5e-158 563.5 483 55.5
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.5e-158 563.5 467 58.7
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 1.5e-158 563.5 467 65.5
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 4.2e-158 562.0 487 54.8
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 4.2e-158 562.0 486 55.1
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 1.6e-157 560.1 459 57.5
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 1.0e-156 557.4 448 56.7
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 9.8e-155 550.8 464 57.1
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 2.9e-151 539.3 513 53.4
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 1.4e-148 530.4 477 54.9
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 3.0e-148 529.3 350 69.4
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 1.3e-146 523.9 422 59.7
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 5.0e-143 511.9 347 67.1
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.2e-141 507.3 446 56.3
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 5.8e-139 498.4 393 58.5
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 5.4e-137 491.9 406 58.4
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 7.0e-137 491.5 374 63.6
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 5.0e-135 485.3 350 65.4
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 8.1e-133 478.0 508 47.6
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 2.0e-131 473.4 540 45.7
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 2.0e-131 473.4 474 50.0
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 3.4e-131 472.6 396 57.1
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 2.4e-129 466.5 348 60.3
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 3.2e-129 466.1 461 50.3
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 9.2e-129 464.5 556 46.2
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 3.5e-128 462.6 452 51.1
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 5.1e-127 458.8 376 58.8
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 6.2e-125 451.8 392 57.4
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 8.6e-119 431.4 342 59.9
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 6.2e-117 425.2 397 51.6
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 6.9e-116 421.8 375 56.8
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 6.2e-109 398.7 411 49.4
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 2.4e-108 396.7 365 53.4
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 1.9e-102 377.1 455 45.3
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 9.6e-94 348.2 304 58.6
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 2.1e-88 330.5 420 41.9
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 7.9e-88 328.6 458 40.6
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 1.1e-84 318.2 259 57.1
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 3.1e-84 316.6 199 68.3
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 6.9e-84 315.5 217 68.2
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 2.1e-80 303.9 260 56.9
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 1.3e-79 301.2 499 37.5
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 4.3e-78 296.2 262 54.2
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 5.3e-76 289.3 242 59.9
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 2.7e-72 276.9 216 62.5
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.4e-71 274.6 223 58.7
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 1.7e-69 267.7 168 70.2
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 1.4e-68 264.6 288 48.3
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 2.3e-63 247.3 222 58.1
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 2.0e-62 244.2 496 31.0
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 1.2e-59 235.0 160 64.4
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 1.0e-58 231.9 160 63.8
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.7e-58 231.1 343 36.2
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 1.3e-42 178.3 177 49.2
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.7e-37 161.4 300 32.3
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 1.4e-36 158.3 253 34.8
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 3.1e-36 157.1 253 34.8
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 1.2e-32 145.2 96 65.6
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 1.6e-32 144.8 234 35.5
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 1.2e-30 138.7 134 50.0
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 6.4e-29 132.9 82 68.3
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 3.5e-27 127.1 546 22.7
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 1.3e-26 125.2 87 62.1
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 6.8e-23 112.8 67 68.7
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 2.6e-22 110.9 109 51.4
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 3.4e-22 110.5 68 66.2
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 7.5e-22 109.4 122 50.8
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 7.5e-22 109.4 103 56.3
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.3e-21 108.6 266 27.8
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 1.7e-21 108.2 104 50.0
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 1.3e-18 98.6 77 58.4
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 2.1e-16 91.3 217 28.1
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 3.6e-16 90.5 93 52.7
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 1.4e-15 88.6 110 42.7
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 9.2e-12 75.9 83 47.0
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 1.3e-10 72.0 94 43.6
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 3.9e-10 70.5 42 71.4
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 1.1e-09 68.9 54 55.6
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 1.5e-06 58.5 84 40.5


User provided reference genes

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