Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.9e-59 232.3 116 100.0
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 1.9e-59 232.3 116 100.0
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 4.5e-56 221.1 120 94.2
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 1.1e-41 173.3 121 77.7
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.6e-19 99.0 98 58.2
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 3.4e-19 98.6 119 47.9
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 1.3e-18 96.7 113 48.7
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 1.1e-17 93.6 118 44.9
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.1e-17 91.7 120 45.8
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.9e-14 82.8 117 44.4
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 4.2e-14 81.6 131 42.0
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 9.4e-14 80.5 122 42.6
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.1e-13 79.3 122 42.6
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 2.1e-13 79.3 105 45.7
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.1e-13 79.3 119 45.4
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 2.7e-13 79.0 117 43.6
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 2.7e-13 79.0 118 41.5
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 6.1e-13 77.8 72 50.0
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 6.1e-13 77.8 127 40.2
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 6.1e-13 77.8 128 39.1
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 6.1e-13 77.8 125 41.6
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 8.0e-13 77.4 70 54.3
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.0e-12 77.0 120 44.2
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.0e-12 77.0 119 42.0
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.8e-12 76.3 118 39.8
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 3.0e-12 75.5 102 45.1
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 4.0e-12 75.1 116 36.2
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.2e-12 74.7 120 44.2
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.2e-12 74.7 120 44.2
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 5.2e-12 74.7 109 44.0
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 6.8e-12 74.3 119 42.0
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 8.8e-12 73.9 60 55.0
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.2e-11 73.6 67 52.2
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.5e-11 73.2 102 40.2
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 2.0e-11 72.8 102 46.1
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 2.6e-11 72.4 120 41.7
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 2.6e-11 72.4 93 40.9
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 2.6e-11 72.4 102 45.1
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.6e-11 72.4 104 42.3
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.4e-11 72.0 68 52.9
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 3.4e-11 72.0 54 57.4
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 3.4e-11 72.0 88 40.9
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 3.4e-11 72.0 123 39.0
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 4.4e-11 71.6 123 39.0
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 5.7e-11 71.2 98 43.9
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 5.7e-11 71.2 112 43.8
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 5.7e-11 71.2 117 41.9
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 7.5e-11 70.9 60 50.0
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 9.8e-11 70.5 98 45.9
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.8e-11 70.5 71 50.7
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 9.8e-11 70.5 71 50.7
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 9.8e-11 70.5 89 42.7
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.3e-10 70.1 71 50.7
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.3e-10 70.1 116 40.5
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.2e-10 69.3 119 38.7
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 2.2e-10 69.3 115 38.3
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 2.8e-10 68.9 116 37.1
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.8e-10 68.9 119 37.8
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 2.8e-10 68.9 80 41.2
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 2.8e-10 68.9 115 39.1
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.7e-10 68.6 102 40.2
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.8e-10 68.2 102 40.2
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 4.8e-10 68.2 110 40.0
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 6.3e-10 67.8 118 37.3
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 6.3e-10 67.8 54 53.7
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 6.3e-10 67.8 105 39.0
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 8.3e-10 67.4 121 33.1
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 8.3e-10 67.4 54 55.6
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 1.1e-09 67.0 62 53.2
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 1.1e-09 67.0 99 42.4
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.4e-09 66.6 79 46.8
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.4e-09 66.6 120 33.3
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 1.8e-09 66.2 119 32.8
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 1.8e-09 66.2 112 39.3
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.4e-09 65.9 115 37.4
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 3.1e-09 65.5 116 38.8
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.4e-09 64.7 98 44.9
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 9.1e-09 63.9 101 40.6
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.2e-08 63.5 112 38.4
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.6e-08 63.2 121 37.2
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 2.0e-08 62.8 90 43.3
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 2.0e-08 62.8 77 48.1
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 2.0e-08 62.8 64 50.0
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.0e-08 62.8 64 50.0
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.0e-08 62.8 64 50.0
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.0e-08 62.8 64 50.0
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 2.0e-08 62.8 81 40.7
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 2.7e-08 62.4 90 38.9
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.5e-08 61.6 63 42.9
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.9e-08 61.2 124 34.7
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.9e-08 61.2 123 35.0
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 1.0e-07 60.5 109 34.9
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.3e-07 60.1 114 31.6
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.3e-07 60.1 54 51.9
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.7e-07 59.7 117 30.8
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.7e-07 59.7 104 41.3
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-07 59.7 65 46.2
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 1.7e-07 59.7 56 46.4
Sopen11g003730 Solanum pennellii HOM05D021137 ORTHO05D004438 1.7e-07 59.7 112 37.5
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 2.3e-07 59.3 100 40.0
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.3e-07 59.3 99 39.4
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 2.3e-07 59.3 91 44.0
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.9e-07 58.9 115 36.5
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 2.9e-07 58.9 114 36.8
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 2.9e-07 58.9 114 36.8
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.8e-07 58.5 117 38.5
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 5.0e-07 58.2 104 33.7
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.6e-07 57.8 55 50.9
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.6e-07 57.8 55 50.9
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 6.6e-07 57.8 58 44.8
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 6.6e-07 57.8 110 35.5
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 8.6e-07 57.4 104 37.5
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 8.6e-07 57.4 107 36.4
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 8.6e-07 57.4 86 40.7
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 1.1e-06 57.0 104 36.5
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.5e-06 56.6 125 37.6
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.5e-06 55.8 108 32.4
Medtr4g056580 Medicago truncatula HOM05D014522 ORTHO05D004438 2.5e-06 55.8 95 43.2
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 2.5e-06 55.8 70 44.3
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 3.3e-06 55.5 61 45.9
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 4.2e-06 55.1 119 37.8
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 4.2e-06 55.1 61 47.5
Ciclev10033003m.g Citrus clementina HOM05D005304 ORTHO05D004438 5.5e-06 54.7 85 35.3
Solyc11g007870.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 5.5e-06 54.7 112 34.8
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.2e-06 54.3 77 44.2


User provided reference genes

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