Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g070400.3 Solanum lycopersicum HOM05D003582 ORTHO05D004789 1.8e-181 639.0 304 100.0
Sopen03g019090 Solanum pennellii HOM05D003582 ORTHO05D004789 9.0e-157 557.0 304 89.1
Nitab4.5_0000154g0240 Nicotiana tabacum HOM05D003582 ORTHO05D004789 2.4e-125 452.6 303 73.6
Nitab4.5_0001434g0060 Nicotiana tabacum HOM05D003582 ORTHO05D004789 4.5e-124 448.4 303 72.3
Peaxi162Scf01619g00009 Petunia axillaris HOM05D003582 ORTHO05D004789 7.7e-124 447.6 303 72.6
CAN.G497.77 Capsicum annuum HOM05D003582 ORTHO05D004789 3.1e-117 425.6 303 70.0
Glyma.19G033700 Glycine max HOM05D003582 ORTHO05D004789 4.5e-116 421.8 301 68.1
Phvul.004G041500 Phaseolus vulgaris HOM05D003582 ORTHO05D004789 5.9e-116 421.4 301 67.8
Glyma.13G053100 Glycine max HOM05D003582 ORTHO05D004789 1.7e-115 419.9 301 67.8
Peaxi162Scf00166g00210 Petunia axillaris HOM05D003582 ORTHO05D004789 1.7e-115 419.9 301 69.1
CiPaw.03G083900 Carya illinoinensis HOM05D003582 ORTHO05D004789 2.2e-115 419.5 301 68.4
Nitab4.5_0005120g0010 Nicotiana tabacum HOM05D003582 ORTHO05D004789 2.2e-115 419.5 303 68.3
CANSAT64G2522 Cannabis sativa HOM05D003582 ORTHO05D004789 5.0e-115 418.3 302 67.9
Eucgr.J01408 Eucalyptus grandis HOM05D003582 ORTHO05D004789 6.5e-115 417.9 301 67.1
Thecc.04G104800 Theobroma cacao HOM05D003582 ORTHO05D004789 6.5e-115 417.9 301 67.4
VMungo0464G0741 Vigna mungo HOM05D003582 ORTHO05D004789 8.5e-115 417.5 301 67.4
Cfa007687 Carpinus fangiana HOM05D003582 ORTHO05D004789 1.1e-114 417.2 301 67.8
Duzib133G0617 Durio zibethinus HOM05D003582 ORTHO05D004789 1.5e-114 416.8 301 66.8
Cpa.g.sc14.212 Carica papaya HOM05D003582 ORTHO05D004789 2.5e-114 416.0 303 66.3
Manes.01G103000 Manihot esculenta HOM05D003582 ORTHO05D004789 2.5e-114 416.0 301 68.1
arahy.Tifrunner.gnm1.ann1.936LCP Arachis hypogaea HOM05D003582 ORTHO05D004789 3.2e-114 415.6 301 67.4
RcHm_v2.0_Chr2g0165001 Rosa chinensis HOM05D003582 ORTHO05D004789 4.2e-114 415.2 301 66.8
vmacro18132 Vaccinium macrocarpon HOM05D003582 ORTHO05D004789 4.2e-114 415.2 301 67.1
Duzib138G0134 Durio zibethinus HOM05D003582 ORTHO05D004789 5.5e-114 414.8 301 66.4
Sc10g0000640 Simmondsia chinensis HOM05D003582 ORTHO05D004789 5.5e-114 414.8 301 65.1
GSVIVG01036556001 Vitis vinifera HOM05D003582 ORTHO05D004789 5.5e-114 414.8 301 67.1
Rhsim08G0076400 Rhododendron simsii HOM05D003582 ORTHO05D004789 7.2e-114 414.5 301 67.8
Ca_20768_v3 Cicer arietinum L. HOM05D003582 ORTHO05D004789 1.2e-113 413.7 301 66.4
PGSC0003DMG400001466 Solanum tuberosum HOM05D003582 ORTHO05D004789 1.6e-113 413.3 303 68.3
MELO3C022046.2 Cucumis melo HOM05D003582 ORTHO05D004789 2.1e-113 412.9 303 65.3
Gorai.001G207700 Gossypium raimondii HOM05D003582 ORTHO05D004789 2.1e-113 412.9 301 66.8
Prupe.3G249800 Prunus persica HOM05D003582 ORTHO05D004789 2.1e-113 412.9 301 66.4
Solyc02g089175.2 Solanum lycopersicum HOM05D003582 ORTHO05D004789 2.1e-113 412.9 303 68.0
Hma1.2p1_0069F.1_g037480 Hydrangea macrophylla HOM05D003582 ORTHO05D004789 2.7e-113 412.5 303 66.3
Gohir.A11G159700 Gossypium hirsutum HOM05D003582 ORTHO05D004789 3.6e-113 412.1 301 66.4
MD09G1073500 Malus domestica HOM05D003582 ORTHO05D004789 3.6e-113 412.1 301 66.4
Oeu021205.1 Olea europaea HOM05D003582 ORTHO05D004789 3.6e-113 412.1 301 67.1
Potri.017G099200 Populus trichocarpa HOM05D003582 ORTHO05D004789 4.7e-113 411.8 301 66.4
Gohir.D11G165800 Gossypium hirsutum HOM05D003582 ORTHO05D004789 8.0e-113 411.0 301 66.1
Lalb_Chr02g0158711 Lupinus albus HOM05D003582 ORTHO05D004789 8.0e-113 411.0 301 66.8
Sopen02g033970 Solanum pennellii HOM05D003582 ORTHO05D004789 8.0e-113 411.0 303 67.3
Gorai.007G176800 Gossypium raimondii HOM05D003582 ORTHO05D004789 1.0e-112 410.6 301 66.1
QL02p066091 Quercus lobata HOM05D003582 ORTHO05D004789 1.0e-112 410.6 301 67.1
Cc00_g14200 Coffea canephora HOM05D003582 ORTHO05D004789 1.4e-112 410.2 301 66.8
CSS0004005 Camellia sinensis var. sinensis HOM05D003582 ORTHO05D004789 1.8e-112 409.8 301 66.1
CSS0033422 Camellia sinensis var. sinensis HOM05D003582 ORTHO05D004789 1.8e-112 409.8 301 66.1
ClCG11G004930 Citrullus lanatus HOM05D003582 ORTHO05D004789 1.8e-112 409.8 303 64.7
Gohir.A07G180200 Gossypium hirsutum HOM05D003582 ORTHO05D004789 1.8e-112 409.8 301 66.4
Lj4A122T65 Lonicera japonica HOM05D003582 ORTHO05D004789 1.8e-112 409.8 303 65.0
MD17G1065000 Malus domestica HOM05D003582 ORTHO05D004789 1.8e-112 409.8 301 65.4
ECA238G0900 Erigeron canadensis HOM05D003582 ORTHO05D004789 4.0e-112 408.7 301 66.1
Sed0002547 Sechium edule HOM05D003582 ORTHO05D004789 4.0e-112 408.7 301 65.1
arahy.Tifrunner.gnm1.ann1.3TK0C1 Arachis hypogaea HOM05D003582 ORTHO05D004789 5.2e-112 408.3 301 66.1
CsaV3_5G038660 Cucumis sativus L. HOM05D003582 ORTHO05D004789 5.2e-112 408.3 303 64.7
DCAR_025450 Daucus carota HOM05D003582 ORTHO05D004789 5.2e-112 408.3 301 65.4
Migut.H00593 Erythranthe guttata HOM05D003582 ORTHO05D004789 5.2e-112 408.3 301 66.8
HanXRQChr14g0452431 Helianthus annuus HOM05D003582 ORTHO05D004789 5.2e-112 408.3 301 65.8
PGR042G1977 Punica granatum HOM05D003582 ORTHO05D004789 5.2e-112 408.3 303 65.0
Manes.02G058750 Manihot esculenta HOM05D003582 ORTHO05D004789 6.8e-112 407.9 301 66.1
arahy.Tifrunner.gnm1.ann1.90NIGC Arachis hypogaea HOM05D003582 ORTHO05D004789 8.8e-112 407.5 301 65.8
arahy.Tifrunner.gnm1.ann1.YPLH9H Arachis hypogaea HOM05D003582 ORTHO05D004789 8.8e-112 407.5 301 65.8
TWI60G0725 Tripterygium wilfordii HOM05D003582 ORTHO05D004789 8.8e-112 407.5 303 65.0
Potri.004G117900 Populus trichocarpa HOM05D003582 ORTHO05D004789 1.2e-111 407.1 301 65.4
Nitab4.5_0006516g0040 Nicotiana tabacum HOM05D003582 ORTHO05D004789 1.5e-111 406.8 303 66.7
TWI32G0037 Tripterygium wilfordii HOM05D003582 ORTHO05D004789 1.5e-111 406.8 303 64.7
Ah.10g038150 Amaranthus hybridus HOM05D003582 ORTHO05D004789 2.6e-111 406.0 303 63.7
FAN05G2033 Fragaria x ananassa HOM05D003582 ORTHO05D004789 2.6e-111 406.0 301 65.1
FAN14G2787 Fragaria x ananassa HOM05D003582 ORTHO05D004789 2.6e-111 406.0 301 65.1
FAN02G0181 Fragaria x ananassa HOM05D003582 ORTHO05D004789 5.7e-111 404.8 301 64.8
Sabra17G0085700 Salix brachista HOM05D003582 ORTHO05D004789 5.7e-111 404.8 301 65.1
Sed0004528 Sechium edule HOM05D003582 ORTHO05D004789 5.7e-111 404.8 301 65.4
Nn3g17508 Nelumbo nucifera HOM05D003582 ORTHO05D004789 7.5e-111 404.4 301 65.8
Lj1g0000491 Lotus japonicus HOM05D003582 ORTHO05D004789 2.2e-110 402.9 301 66.1
PSO017G5930 Papaver somniferum HOM05D003582 ORTHO05D004789 2.2e-110 402.9 303 65.3
TAR371G0699 Trochodendron aralioides HOM05D003582 ORTHO05D004789 2.2e-110 402.9 301 65.8
HanXRQChr15g0489031 Helianthus annuus HOM05D003582 ORTHO05D004789 2.8e-110 402.5 303 64.7
PSO478G3099 Papaver somniferum HOM05D003582 ORTHO05D004789 2.8e-110 402.5 303 65.0
SalBow1G0251 Salvia bowleyana HOM05D003582 ORTHO05D004789 2.8e-110 402.5 303 64.7
MBI16_g37884_MAGBIO Magnolia biondii HOM05D003582 ORTHO05D004789 8.3e-110 401.0 301 64.8
HanXRQChr09g0264801 Helianthus annuus HOM05D003582 ORTHO05D004789 1.1e-109 400.6 301 64.5
Ciclev10011357m.g Citrus clementina HOM05D003582 ORTHO05D004789 1.4e-109 400.2 304 65.8
SGA_v2.0_scaffold52G19103 Striga asiatica HOM05D003582 ORTHO05D004789 1.4e-109 400.2 305 63.9
Aqoxy3G01120 Aquilegia oxysepala HOM05D003582 ORTHO05D004789 2.4e-109 399.4 304 64.8
Lsat_1_v5_gn_2_89661 Lactuca sativa HOM05D003582 ORTHO05D004789 2.4e-109 399.4 301 65.4
AUR62009488 Chenopodium quinoa HOM05D003582 ORTHO05D004789 4.1e-109 398.7 301 62.8
Migut.O00385 Erythranthe guttata HOM05D003582 ORTHO05D004789 5.4e-109 398.3 301 63.1
Hund13680 Selenicereus undatus HOM05D003582 ORTHO05D004789 9.1e-109 397.5 301 62.8
Lj2g0024434 Lotus japonicus HOM05D003582 ORTHO05D004789 1.2e-108 397.1 301 63.8
CDE07G0251 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 1.6e-108 396.7 301 62.1
ECA232G0785 Erigeron canadensis HOM05D003582 ORTHO05D004789 1.6e-108 396.7 303 63.7
Aa31LG11G13760 Aethionema arabicum HOM05D003582 ORTHO05D004789 2.7e-108 396.0 301 63.5
AUR62023166 Chenopodium quinoa HOM05D003582 ORTHO05D004789 2.7e-108 396.0 301 62.1
CDE04G3698 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 3.5e-108 395.6 301 62.8
Actinidia17602 Actinidia chinensis HOM05D003582 ORTHO05D004789 4.5e-108 395.2 304 64.8
Aqoxy7G03254 Aquilegia oxysepala HOM05D003582 ORTHO05D004789 4.5e-108 395.2 302 64.6
Nn4g23497 Nelumbo nucifera HOM05D003582 ORTHO05D004789 2.3e-107 392.9 301 63.8
Ah.16g101080 Amaranthus hybridus HOM05D003582 ORTHO05D004789 2.9e-107 392.5 301 61.5
CDE07G0024 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 2.9e-107 392.5 301 62.1
AL6G26670 Arabidopsis lyrata HOM05D003582 ORTHO05D004789 1.1e-106 390.6 301 62.5
Thhalv10013036m.g Eutrema salsugineum HOM05D003582 ORTHO05D004789 1.9e-106 389.8 301 62.1
THA.LOC104802987 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 3.3e-106 389.0 301 63.1
HPP92_012207 Vanilla planifolia HOM05D003582 ORTHO05D004789 3.3e-106 389.0 301 62.5
AT5G15810 Arabidopsis thaliana HOM05D003582 ORTHO05D004789 4.2e-106 388.7 301 62.5
Carub.0006s1397 Capsella rubella HOM05D003582 ORTHO05D004789 1.6e-105 386.7 301 61.8
Sp6g28300 Schrenkiella parvula HOM05D003582 ORTHO05D004789 2.1e-105 386.3 301 61.1
C09p61260 Brassica napus HOM05D003582 ORTHO05D004789 4.7e-105 385.2 301 61.8
Sp3g01380 Schrenkiella parvula HOM05D003582 ORTHO05D004789 4.7e-105 385.2 301 62.5
BcaB08g36862 Brassica carinata HOM05D003582 ORTHO05D004789 6.1e-105 384.8 301 61.5
Carub.0003s0143 Capsella rubella HOM05D003582 ORTHO05D004789 6.1e-105 384.8 301 61.5
A10p23210 Brassica napus HOM05D003582 ORTHO05D004789 1.0e-104 384.0 301 61.1
BraA10t44389Z Brassica rapa HOM05D003582 ORTHO05D004789 1.0e-104 384.0 301 61.1
CARHR197510 Cardamine hirsuta HOM05D003582 ORTHO05D004789 1.4e-104 383.6 301 61.8
BcaC04g18934 Brassica carinata HOM05D003582 ORTHO05D004789 1.8e-104 383.3 301 61.5
BolC9t58968H Brassica oleracea HOM05D003582 ORTHO05D004789 1.8e-104 383.3 301 61.5
FAN09G2080 Fragaria x ananassa HOM05D003582 ORTHO05D004789 3.0e-104 382.5 301 61.5
TPR.G15956 Trifolium pratense HOM05D003582 ORTHO05D004789 3.0e-104 382.5 300 61.3
THA.LOC104827143 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 5.2e-104 381.7 301 62.1
AT3G02320 Arabidopsis thaliana HOM05D003582 ORTHO05D004789 8.9e-104 380.9 301 61.5
Psat1g066040 Pisum sativum HOM05D003582 ORTHO05D004789 8.9e-104 380.9 300 62.0
unitig_0.g556 Utricularia gibba HOM05D003582 ORTHO05D004789 8.9e-104 380.9 287 64.8
AL3G11610 Arabidopsis lyrata HOM05D003582 ORTHO05D004789 1.5e-103 380.2 301 61.5
EL10Ac2g04447 Beta vulgaris HOM05D003582 ORTHO05D004789 1.5e-103 380.2 302 60.6
BcaC09g47691 Brassica carinata HOM05D003582 ORTHO05D004789 2.0e-103 379.8 301 61.8
Aa31LG5G12860 Aethionema arabicum HOM05D003582 ORTHO05D004789 4.4e-103 378.6 304 61.5
Medtr6g015885 Medicago truncatula HOM05D003582 ORTHO05D004789 5.7e-103 378.3 300 60.7
A03p07370 Brassica napus HOM05D003582 ORTHO05D004789 7.5e-103 377.9 301 60.1
Haze_14390 Corylus avellana HOM05D003582 ORTHO05D004789 1.7e-102 376.7 396 51.5
BcaB01g05025 Brassica carinata HOM05D003582 ORTHO05D004789 3.7e-102 375.6 301 60.1
CARHR076300 Cardamine hirsuta HOM05D003582 ORTHO05D004789 3.7e-102 375.6 301 61.1
Sabra04G0071000 Salix brachista HOM05D003582 ORTHO05D004789 1.8e-101 373.2 363 53.2
THA.LOC104823883 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 1.8e-101 373.2 301 59.8
BNapus_Darmor_BZH_scaffold_208p00140 Brassica napus HOM05D003582 ORTHO05D004789 3.2e-101 372.5 310 60.0
BraA03t10061Z Brassica rapa HOM05D003582 ORTHO05D004789 3.2e-101 372.5 308 59.1
BolC1t05913H Brassica oleracea HOM05D003582 ORTHO05D004789 5.4e-101 371.7 308 59.7
BcaC09g47692 Brassica carinata HOM05D003582 ORTHO05D004789 1.2e-100 370.5 301 60.8
SEGI_16900 Sequoiadendron giganteum HOM05D003582 ORTHO05D004789 3.5e-100 369.0 301 59.1
BraSC141t45620Z Brassica rapa HOM05D003582 ORTHO05D004789 1.3e-99 367.1 303 60.4
Zm00001eb012220 Zea mays HOM05D003582 ORTHO05D004789 4.3e-98 362.1 302 57.0
C03p08560 Brassica napus HOM05D003582 ORTHO05D004789 1.2e-97 360.5 331 54.7
BolC3t13361H Brassica oleracea HOM05D003582 ORTHO05D004789 1.2e-97 360.5 331 54.7
Gohir.D07G187100 Gossypium hirsutum HOM05D003582 ORTHO05D004789 2.1e-97 359.8 214 77.1
Zm00001eb061890 Zea mays HOM05D003582 ORTHO05D004789 2.3e-96 356.3 302 57.0
ATR0827G075 Amborella trichopoda HOM05D003582 ORTHO05D004789 1.5e-95 353.6 301 56.1
FvH4_6g46450 Fragaria vesca HOM05D003582 ORTHO05D004789 7.5e-95 351.3 215 74.4
Os03g0786700 Oryza sativa ssp. japonica HOM05D003582 ORTHO05D004789 7.5e-95 351.3 301 56.5
HPP92_012242 Vanilla planifolia HOM05D003582 ORTHO05D004789 7.5e-95 351.3 382 49.0
Dinv34912 Davidia involucrata HOM05D003582 ORTHO05D004789 1.3e-94 350.5 207 77.3
SGA_v2.0_scaffold4G02360 Striga asiatica HOM05D003582 ORTHO05D004789 1.7e-94 350.1 213 76.1
TAR629G1978 Trochodendron aralioides HOM05D003582 ORTHO05D004789 3.5e-92 342.4 301 58.5
SMO203G0237 Selaginella moellendorffii HOM05D003582 ORTHO05D004789 2.5e-90 336.3 302 54.0
Atru.chr8.571 Acer truncatum HOM05D003582 ORTHO05D004789 5.6e-90 335.1 195 80.5
Actinidia26267 Actinidia chinensis HOM05D003582 ORTHO05D004789 9.5e-90 334.3 301 57.8
Pp3c16_12880 Physcomitrium patens HOM05D003582 ORTHO05D004789 1.1e-85 320.9 301 51.8
CBR_g3723 Chara braunii HOM05D003582 ORTHO05D004789 1.0e-83 314.3 298 51.3
Mapoly0103s0023 Marchantia polymorpha HOM05D003582 ORTHO05D004789 1.3e-83 313.9 304 50.7
PGSC0003DMG402007649 Solanum tuberosum HOM05D003582 ORTHO05D004789 5.1e-83 312.0 285 59.6
DCAR_011024 Daucus carota HOM05D003582 ORTHO05D004789 5.2e-80 302.0 313 52.7
Os10g0357800 Oryza sativa ssp. japonica HOM05D003582 ORTHO05D004789 1.9e-74 283.5 291 47.8
Zm00001eb230770 Zea mays HOM05D003582 ORTHO05D004789 2.8e-73 279.6 290 47.6
Oeu004424.1 Olea europaea HOM05D003582 ORTHO05D004789 5.2e-72 275.4 221 63.3
MCO10G029 Micromonas commoda HOM05D003582 ORTHO05D004789 5.4e-69 265.4 294 44.6
COL.COLO4_08945 Corchorus olitorius HOM05D003582 ORTHO05D004789 6.9e-64 248.4 325 44.3
Eucgr.J01405 Eucalyptus grandis HOM05D003582 ORTHO05D004789 3.4e-63 246.1 202 62.4
PRCOL_00005295 Prasinoderma coloniale HOM05D003582 ORTHO05D004789 6.2e-57 225.3 292 41.1
Cre10.g422000 Chlamydomonas reinhardtii HOM05D003582 ORTHO05D004789 5.3e-48 195.7 221 43.4
Hma1.2p1_1502F.1_g287410 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 1.8e-40 170.6 289 39.4
Hma1.2p1_2026F.1_g311626 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 1.8e-40 170.6 289 39.4
CDE01G0712 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 7.6e-39 165.2 108 67.6
AagrBONN_evm.TU.Sc2ySwM_344.1885 Anthoceros agrestis HOM05D003582 ORTHO05D004789 6.5e-38 162.2 127 57.5
MBI16_g47662_MAGBIO Magnolia biondii HOM05D003582 ORTHO05D022453 5.0e-30 136.0 213 40.4
CDE04G0570 Ceratophyllum demersum HOM05D003582 ORTHO05D130660 1.1e-26 124.8 99 57.6
Oeu021203.1 Olea europaea HOM05D000526 ORTHO05D000956 3.6e-20 103.2 62 72.6
Dinv33857 Davidia involucrata HOM05D003582 ORTHO05D004789 3.7e-17 93.2 48 85.4
COL.COLO4_00020 Corchorus olitorius HOM05D003582 ORTHO05D022453 1.5e-13 81.3 48 77.1
Hma1.2p1_1502F.1_g287400 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 1.7e-09 67.8 103 41.7
Hma1.2p1_2026F.1_g311623 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 1.7e-09 67.8 103 41.7


User provided reference genes

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