Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 7.0e-81 303.9 155 100.0
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 3.7e-74 281.6 165 88.5
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 6.0e-56 221.1 195 66.2
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.3e-55 219.9 106 100.0
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 6.6e-55 217.6 197 64.5
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.9e-54 216.1 195 64.1
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 7.6e-51 204.1 213 58.7
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 7.6e-43 177.6 206 52.9
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.2e-42 176.0 183 55.7
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.4e-41 173.3 201 53.2
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.9e-41 172.9 170 56.5
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 9.3e-41 170.6 185 54.6
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.1e-40 169.5 183 56.3
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.7e-40 169.1 184 55.4
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 4.6e-40 168.3 205 51.2
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 4.6e-40 168.3 176 52.3
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 6.0e-40 167.9 185 54.1
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 6.0e-40 167.9 172 53.5
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 7.8e-40 167.5 184 51.6
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 1.9e-38 162.9 167 54.5
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.9e-38 162.9 174 53.4
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.3e-38 162.2 179 54.7
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 4.3e-38 161.8 184 51.6
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 7.3e-38 161.0 188 52.1
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.3e-38 161.0 179 54.2
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 7.3e-38 161.0 167 55.7
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.6e-37 159.8 182 50.0
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.6e-37 159.8 201 47.8
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 2.1e-37 159.5 187 52.4
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 8.1e-37 157.5 198 50.5
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-36 157.1 181 53.0
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.1e-36 157.1 185 49.2
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-36 156.8 181 52.5
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 2.4e-36 156.0 190 47.9
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.0e-36 155.2 190 51.6
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.0e-36 155.2 181 52.5
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.3e-36 154.8 190 51.6
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.3e-36 154.8 190 51.6
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 5.3e-36 154.8 181 50.3
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 5.3e-36 154.8 182 49.5
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.2e-35 153.7 175 54.3
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.5e-35 153.3 196 48.5
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.6e-35 152.5 189 48.7
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 7.6e-35 151.0 177 53.7
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 9.9e-35 150.6 153 57.5
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.7e-34 149.8 193 48.2
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.9e-34 149.1 197 48.2
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.8e-34 148.7 165 51.5
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 3.8e-34 148.7 183 47.0
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.4e-33 146.7 192 48.4
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.9e-33 146.4 171 51.5
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.2e-33 145.6 203 46.3
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 3.2e-33 145.6 180 47.2
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 4.2e-33 145.2 185 48.6
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 5.4e-33 144.8 171 50.9
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.1e-33 144.4 152 56.6
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.1e-33 144.4 152 56.6
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 7.1e-33 144.4 169 52.1
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 9.3e-33 144.1 184 49.5
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.2e-32 143.7 197 44.7
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.2e-32 143.7 172 50.0
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.2e-32 143.7 185 49.2
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.1e-32 142.9 160 53.1
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.5e-32 142.1 194 47.4
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 4.6e-32 141.7 231 42.4
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.0e-32 141.4 194 46.9
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.0e-32 141.4 194 46.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 6.0e-32 141.4 188 48.4
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 7.9e-32 141.0 115 63.5
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.0e-31 140.6 173 49.7
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.0e-31 140.6 181 48.6
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.0e-31 140.6 172 50.6
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.0e-31 140.6 170 50.6
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.3e-31 140.2 180 48.3
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.3e-31 140.2 204 46.1
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.3e-31 140.2 204 46.1
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.3e-31 140.2 204 46.1
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 2.3e-31 139.4 171 51.5
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 2.3e-31 139.4 173 52.0
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 3.9e-31 138.7 168 50.0
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 5.1e-31 138.3 167 51.5
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 6.7e-31 137.9 174 48.3
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 8.7e-31 137.5 168 49.4
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 8.7e-31 137.5 174 48.3
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 8.7e-31 137.5 172 50.6
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 8.7e-31 137.5 177 48.0
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.1e-30 137.1 178 49.4
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 5.6e-30 134.8 202 43.1
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 7.4e-30 134.4 169 48.5
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 9.6e-30 134.0 179 46.9
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-29 133.7 183 48.1
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.3e-29 133.7 183 48.1
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.3e-29 133.7 170 50.0
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.6e-29 133.3 181 44.8
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.7e-29 132.1 170 47.6
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 3.7e-29 132.1 186 46.8
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 3.7e-29 132.1 196 41.8
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 6.2e-29 131.3 151 49.7
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 6.2e-29 131.3 183 46.4
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 8.1e-29 131.0 169 47.3
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-28 130.2 168 47.0
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.8e-28 129.8 180 44.4
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.8e-28 129.8 156 48.7
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 3.1e-28 129.0 185 46.5
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 4.0e-28 128.6 107 62.6
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 5.3e-28 128.3 193 44.6
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 5.3e-28 128.3 186 45.7
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 5.3e-28 128.3 181 44.8
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 6.9e-28 127.9 168 49.4
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 9.0e-28 127.5 192 43.8
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 9.0e-28 127.5 168 48.8
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-27 127.1 168 46.4
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.5e-27 126.7 158 46.2
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.0e-27 126.3 148 49.3
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 3.4e-27 125.6 171 46.2
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.4e-27 125.6 137 51.8
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 3.4e-27 125.6 163 47.2
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 4.5e-27 125.2 194 44.3
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.3e-26 123.6 181 45.3
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.8e-26 122.1 198 46.0
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 4.9e-26 121.7 195 47.2
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 8.4e-26 120.9 174 44.3
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.9e-25 119.8 225 40.9
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 3.2e-25 119.0 195 42.6
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.2e-25 119.0 201 39.8
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 4.2e-25 118.6 186 41.4
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 5.5e-25 118.2 179 43.0
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 7.1e-25 117.9 188 41.5
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 9.3e-25 117.5 186 40.3
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.2e-24 117.1 205 41.5
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.6e-24 116.7 193 40.9
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.1e-24 116.3 166 45.2
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 2.7e-24 115.9 185 42.2
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 2.7e-24 115.9 185 41.6
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.7e-24 115.9 203 39.4
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.7e-24 115.9 189 42.9
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 7.9e-24 114.4 186 40.9
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.0e-23 114.0 188 40.4
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.3e-23 112.8 193 39.4
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 2.3e-23 112.8 206 41.3
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.3e-23 112.8 202 43.1
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.0e-23 112.5 154 46.1
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 5.1e-23 111.7 174 43.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 5.1e-23 111.7 205 41.5
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-22 110.2 194 39.2
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-22 110.2 194 39.2
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.5e-22 110.2 205 44.4
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-22 109.8 195 39.0
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.9e-22 109.8 175 41.1
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.3e-22 109.0 174 40.2
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 5.7e-22 108.2 165 41.8
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 9.6e-22 107.5 193 40.4
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.8e-21 105.9 198 39.9
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.7e-21 105.5 204 37.3
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 6.2e-21 104.8 136 46.3
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 6.2e-21 104.8 260 34.2
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 8.2e-21 104.4 168 41.1
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.4e-20 103.6 171 40.9
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.0e-19 99.8 136 43.4
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 7.6e-19 97.8 137 43.1
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 7.6e-19 97.8 105 55.2
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.3e-18 97.1 144 43.1
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.4e-17 93.6 171 42.1
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.5e-17 92.8 119 46.2
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.2e-16 90.5 113 53.1
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.1e-16 89.7 153 39.2
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.8e-15 86.7 153 37.9
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.8e-15 86.7 180 38.3
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.3e-15 86.3 172 41.9
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 5.1e-15 85.1 174 39.7
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.1e-14 84.0 172 39.5
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-14 83.2 174 39.1
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 2.5e-14 82.8 174 39.1
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 4.3e-14 82.0 174 38.5
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 4.3e-14 82.0 169 37.3
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-13 80.1 169 38.5
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.7e-13 79.0 169 36.7
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 5.3e-12 75.1 180 35.6
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 4.5e-11 72.0 61 60.7
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.3e-10 70.5 86 48.8
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 1.7e-10 70.1 144 32.6
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 5.0e-10 68.6 112 42.0
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 5.5e-09 65.1 149 30.9
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.1e-06 57.4 206 29.1
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.0e-06 56.6 100 42.0


User provided reference genes

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