Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 3.9e-254 880.9 431 100.0
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 5.6e-245 850.5 424 97.9
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 5.2e-235 817.4 425 92.2
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 1.2e-223 779.6 441 86.8
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 5.1e-214 747.7 427 86.7
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 6.5e-209 730.7 421 84.6
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.1e-208 729.9 425 81.4
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.5e-208 728.8 421 82.9
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.6e-207 726.1 425 82.8
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 3.5e-207 724.9 421 82.9
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 1.0e-206 723.4 421 83.1
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 1.1e-205 719.9 424 81.1
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 1.1e-205 719.9 424 80.9
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.3e-205 718.4 421 81.9
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 3.7e-204 714.9 359 96.9
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 4.8e-204 714.5 421 81.5
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.1e-203 713.4 421 81.5
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 5.3e-203 711.1 421 80.8
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.2e-202 709.9 425 79.8
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 1.2e-202 709.9 421 80.8
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 1.2e-202 709.9 425 80.2
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 1.5e-202 709.5 425 80.5
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 2.0e-202 709.1 421 80.8
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 4.5e-202 708.0 425 79.3
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 3.8e-201 704.9 421 80.5
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 6.5e-201 704.1 422 79.4
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 2.5e-200 702.2 425 79.3
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 3.2e-200 701.8 425 79.3
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 4.2e-200 701.4 421 80.3
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 9.4e-200 700.3 425 78.4
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 1.2e-199 699.9 421 79.1
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 2.7e-199 698.7 421 79.1
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 6.7e-198 694.1 413 79.9
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 1.1e-197 693.3 422 77.3
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 3.3e-197 691.8 421 79.1
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 5.7e-197 691.0 421 77.4
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 5.7e-197 691.0 422 76.8
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 7.4e-197 690.6 421 79.3
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 1.7e-196 689.5 422 75.6
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 1.7e-196 689.5 421 77.9
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 2.8e-196 688.7 425 77.4
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 2.8e-196 688.7 425 77.4
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 4.8e-196 688.0 421 77.4
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 8.2e-196 687.2 422 77.7
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.1e-195 686.8 421 77.2
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 1.4e-195 686.4 422 77.7
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 1.4e-195 686.4 413 77.7
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 1.8e-195 686.0 413 78.2
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 4.1e-195 684.9 425 77.2
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 5.3e-195 684.5 421 79.3
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 9.1e-195 683.7 413 78.7
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 5.9e-194 681.0 425 75.8
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 1.0e-193 680.2 413 77.7
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 1.7e-193 679.5 416 77.2
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 2.9e-193 678.7 425 77.2
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 2.9e-193 678.7 442 74.2
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 3.8e-193 678.3 420 76.9
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 3.8e-193 678.3 426 76.5
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 5.0e-193 677.9 435 75.4
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 8.5e-193 677.2 421 75.3
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 1.1e-192 676.8 425 76.7
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 2.5e-192 675.6 422 77.0
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 3.2e-192 675.2 420 76.7
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 3.2e-192 675.2 425 76.2
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 4.2e-192 674.9 411 77.6
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 7.2e-192 674.1 422 76.8
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 7.2e-192 674.1 425 75.5
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 1.2e-191 673.3 423 76.8
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 1.6e-191 672.9 420 74.8
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 7.9e-191 670.6 428 75.5
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 1.8e-190 669.5 423 76.6
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 5.1e-190 667.9 413 75.8
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 2.0e-189 666.0 422 76.5
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.0e-189 666.0 425 76.0
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 3.3e-189 665.2 421 75.1
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 6.3e-188 661.0 413 74.6
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 1.4e-187 659.8 421 74.3
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 2.4e-187 659.1 421 73.2
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.4e-187 659.1 435 73.8
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 3.1e-187 658.7 425 75.1
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 4.1e-187 658.3 425 72.7
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 3.5e-186 655.2 401 75.1
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 5.9e-186 654.4 377 82.5
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.3e-185 653.3 474 69.0
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 3.8e-185 651.7 425 74.4
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.6e-183 645.2 435 73.6
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.4e-182 643.3 435 72.9
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.7e-180 636.3 413 72.2
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 1.1e-179 633.6 412 71.1
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 2.2e-177 625.9 397 75.8
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.5e-176 623.2 412 70.1
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 4.0e-174 615.1 475 65.3
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 2.6e-173 612.5 419 70.2
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 1.9e-168 596.3 432 69.4
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.6e-167 593.2 419 65.9
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 6.8e-166 587.8 429 67.6
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 8.8e-166 587.4 427 65.3
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 2.0e-165 586.3 392 72.4
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 4.5e-162 575.1 364 76.1
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 7.2e-160 567.8 464 59.7
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 2.6e-157 559.3 379 70.4
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 3.4e-157 558.9 420 66.7
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 3.7e-156 555.4 508 58.1
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 4.1e-147 525.4 426 58.2
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 2.7e-146 522.7 422 61.6
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 1.3e-145 520.4 422 60.0
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 3.9e-145 518.8 422 61.4
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 4.3e-144 515.4 420 61.7
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.4e-141 505.8 447 56.4
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.7e-140 503.4 413 58.1
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 3.9e-137 492.3 430 55.3
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 1.1e-126 457.6 428 53.3
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 8.7e-121 438.0 412 53.2
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 9.9e-117 424.5 253 78.7
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 8.4e-116 421.4 247 78.1
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 3.5e-106 389.4 246 82.1
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 4.3e-104 382.5 243 76.5
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 6.5e-92 342.0 373 44.0
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 2.1e-90 337.0 432 41.7
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 4.6e-90 335.9 262 64.9
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.9e-88 330.5 179 82.7
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 4.8e-87 325.9 178 83.7
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 2.4e-86 323.6 433 39.3
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 5.9e-61 239.2 172 70.9
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 3.6e-58 229.9 199 59.8
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.2e-48 198.4 169 56.2
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 2.0e-48 197.6 418 31.1
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 4.4e-48 196.4 184 54.3
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 1.3e-44 184.9 145 60.7
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 2.5e-43 180.6 152 59.2
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 4.7e-42 176.4 187 50.3
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 4.7e-42 176.4 113 68.1
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 8.0e-42 175.6 227 43.6
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.2e-37 161.8 132 56.8
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 3.5e-37 160.2 76 92.1
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 4.7e-34 149.8 145 53.1
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.2e-32 145.2 96 68.8
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 9.8e-32 142.1 86 72.1
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 4.1e-30 136.7 125 55.2
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 1.5e-27 128.3 129 53.5
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 4.7e-26 123.2 148 47.3
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 1.3e-23 115.2 126 48.4
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.3e-20 104.4 96 55.2
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 6.2e-18 96.3 67 73.1
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 2.3e-17 94.4 66 65.2
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 3.2e-14 84.0 65 66.2
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.5e-11 75.1 66 62.1
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 4.3e-11 73.6 43 76.7
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 2.1e-10 71.2 82 46.3
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 2.0e-08 64.7 55 56.4
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 2.0e-08 64.7 55 56.4
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 2.6e-08 64.3 47 63.8
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 4.4e-08 63.5 38 73.7
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 5.8e-08 63.2 53 56.6


User provided reference genes

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