Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 1.1e-128 463.8 317 100.0
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 1.1e-128 463.8 317 100.0
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.2e-127 460.3 317 99.4
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 9.5e-125 450.7 315 97.5
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 4.7e-124 448.4 317 96.5
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 4.7e-124 448.4 315 96.8
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 8.6e-118 427.6 307 96.4
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.1e-117 427.2 307 96.4
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 1.1e-109 400.6 315 86.7
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 6.4e-105 384.8 318 85.2
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 1.1e-104 384.0 318 84.3
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 1.1e-104 384.0 317 84.5
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 1.9e-104 383.3 317 84.2
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 1.2e-103 380.6 319 84.6
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 3.5e-103 379.0 305 87.2
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 4.6e-103 378.6 318 82.4
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 9.6e-101 370.9 323 81.1
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 1.2e-100 370.5 317 83.6
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 6.2e-100 368.2 317 82.3
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 8.1e-100 367.9 325 80.0
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 8.1e-100 367.9 323 80.2
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.8e-99 366.7 320 81.2
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 2.4e-99 366.3 320 80.3
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.1e-99 365.9 320 80.9
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 3.1e-99 365.9 317 80.8
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 4.4e-98 362.1 318 82.1
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 2.2e-97 359.8 317 83.9
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 7.1e-96 354.8 309 82.5
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 9.3e-96 354.4 317 82.3
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 3.5e-95 352.4 315 80.6
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 8.7e-94 347.8 318 79.9
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 1.1e-91 340.9 318 79.2
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 1.5e-90 337.0 315 81.3
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 7.1e-88 328.2 315 78.1
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 1.0e-86 324.3 317 78.2
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.9e-86 322.4 317 77.3
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 1.9e-85 320.1 316 78.2
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 1.6e-84 317.0 316 76.6
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.0e-82 310.1 318 74.8
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.6e-82 309.7 318 75.2
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 1.3e-81 307.4 317 75.1
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 2.9e-81 306.2 278 82.4
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 4.9e-81 305.4 316 75.0
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 1.9e-80 303.5 315 74.3
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 2.4e-80 303.1 318 75.2
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 1.0e-78 297.7 319 73.4
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 1.9e-77 293.5 304 76.0
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 1.3e-76 290.8 316 73.4
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 2.6e-74 283.1 317 73.8
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 5.8e-74 282.0 276 78.3
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 5.1e-70 268.9 316 65.5
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 1.1e-69 267.7 305 71.5
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 5.7e-69 265.4 317 70.7
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 2.8e-68 263.1 253 85.8
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 4.8e-68 262.3 253 85.4
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 6.3e-68 261.9 254 85.0
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 1.1e-67 261.2 316 68.0
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 1.4e-67 260.8 247 86.2
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 1.4e-67 260.8 247 86.2
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 3.1e-67 259.6 257 83.3
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 3.1e-67 259.6 257 83.3
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 3.1e-67 259.6 247 85.8
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 4.1e-67 259.2 248 85.9
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 6.9e-67 258.5 249 83.1
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 9.0e-67 258.1 318 69.2
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 9.0e-67 258.1 318 69.2
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 9.0e-67 258.1 248 86.3
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.2e-66 257.7 247 85.8
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 1.3e-65 254.2 317 68.5
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 5.0e-65 252.3 248 85.5
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 1.1e-64 251.1 248 84.3
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.1e-64 251.1 248 83.9
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.1e-64 251.1 248 83.9
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.1e-64 251.1 248 83.9
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 1.1e-64 251.1 242 85.5
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 1.9e-64 250.4 248 84.3
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 1.9e-64 250.4 242 86.0
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 2.5e-64 250.0 248 83.5
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 3.2e-64 249.6 253 82.6
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 5.5e-64 248.8 255 82.0
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 7.2e-64 248.4 248 84.3
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 7.2e-64 248.4 247 83.4
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 1.6e-63 247.3 248 83.5
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.6e-63 247.3 140 80.0
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.1e-63 246.9 254 81.5
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 2.1e-63 246.9 242 86.0
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 2.7e-63 246.5 254 81.9
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.7e-63 246.5 254 81.9
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 4.6e-63 245.7 145 79.3
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 7.9e-63 245.0 252 81.7
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 1.3e-62 244.2 142 79.6
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 1.3e-62 244.2 142 79.6
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 2.5e-61 240.0 248 81.9
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 4.3e-61 239.2 318 65.1
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 7.4e-61 238.4 249 79.9
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 9.7e-61 238.0 316 64.9
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 1.6e-60 237.3 140 77.9
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 1.1e-59 234.6 141 75.9
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.4e-59 234.2 330 54.8
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 4.1e-59 232.6 141 73.8
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 6.9e-59 231.9 140 75.0
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 1.5e-58 230.7 141 73.0
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 1.5e-58 230.7 141 74.5
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.0e-58 230.3 140 72.1
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.0e-58 230.3 140 72.1
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 3.4e-58 229.6 141 73.8
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 3.4e-58 229.6 141 73.8
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 3.4e-58 229.6 141 72.3
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 3.4e-58 229.6 140 72.9
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 4.5e-58 229.2 141 71.6
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 7.7e-58 228.4 140 72.9
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.3e-57 227.6 140 72.9
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 3.6e-55 219.5 316 63.9
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 1.1e-48 198.0 303 63.4
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.2e-48 196.4 206 80.6
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.4e-46 191.0 306 62.4
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 5.2e-46 189.1 307 57.0
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 7.0e-43 178.7 95 84.2
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 1.6e-42 177.6 143 55.2
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 4.5e-42 176.0 141 59.6
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 2.9e-41 173.3 114 67.5
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.8e-38 164.1 104 69.2
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.3e-36 157.9 308 40.6
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.0e-33 146.0 312 32.1
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 1.8e-30 137.5 110 54.5
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.0e-29 134.0 112 56.2
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 4.8e-28 129.4 314 28.7
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 6.3e-28 129.0 91 63.7
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 9.8e-13 78.6 77 54.5
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 1.8e-11 74.3 73 50.7
MBI16_g04072_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.4e-11 73.9 89 48.3
MBI16_g13364_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.6e-10 71.2 87 42.5
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 1.0e-09 68.6 118 36.4
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 1.1e-08 65.1 106 37.7
MBI06_g08594_MAGBIO Magnolia biondii HOM05D038649 ORTHO05D006253 3.3e-08 63.5 78 38.5
MBI06_g08595_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 4.3e-08 63.2 71 42.3
arahy.Tifrunner.gnm1.ann1.HIJE33 Arachis hypogaea HOM05D005280 ORTHO05D006253 9.5e-08 62.0 61 47.5
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 8.0e-07 58.9 136 74.3
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 2.3e-06 57.4 34 73.5


User provided reference genes

Program Settings