Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.5e-164 582.8 296 100.0
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 6.3e-163 577.4 296 99.0
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 5.5e-143 511.1 296 86.5
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 6.8e-133 477.6 297 83.5
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.7e-131 471.9 303 82.2
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 7.8e-113 411.0 306 69.6
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 5.0e-112 408.3 299 69.2
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 3.3e-111 405.6 298 69.8
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 3.6e-110 402.1 298 68.5
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.1e-109 400.6 314 67.2
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.1e-106 388.7 299 69.2
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 1.3e-104 383.6 315 65.7
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 1.9e-103 379.8 306 66.0
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 5.6e-103 378.3 314 65.3
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 5.6e-103 378.3 305 65.6
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 2.3e-101 372.9 306 64.4
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 3.4e-100 369.0 297 66.0
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.3e-99 367.1 307 64.5
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.3e-99 367.1 307 64.2
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.2e-99 366.3 311 63.7
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 4.9e-99 365.2 278 67.6
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.4e-98 363.6 301 65.4
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 5.4e-98 361.7 302 63.9
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 5.4e-98 361.7 266 70.7
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 7.1e-98 361.3 299 63.9
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 2.7e-97 359.4 298 63.8
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.7e-97 359.4 294 63.6
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 6.0e-97 358.2 266 69.5
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 7.8e-97 357.8 264 68.9
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.0e-96 357.5 306 63.7
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.7e-96 356.7 304 64.1
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 3.0e-96 355.9 264 67.4
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 3.9e-96 355.5 266 68.8
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 6.6e-96 354.8 270 67.8
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.6e-96 354.8 225 80.9
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.1e-95 354.0 303 62.4
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 1.5e-95 353.6 296 63.9
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.9e-95 353.2 252 70.2
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.5e-95 352.8 305 63.3
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 2.5e-95 352.8 301 61.1
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 4.3e-95 352.1 269 67.3
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 5.6e-95 351.7 266 68.0
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 5.6e-95 351.7 268 67.5
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.2e-94 350.5 324 61.1
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.2e-94 350.5 324 61.1
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.6e-94 350.1 268 66.8
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 1.6e-94 350.1 264 69.3
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 2.1e-94 349.7 266 67.3
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.1e-94 349.7 305 62.6
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 2.1e-94 349.7 305 62.6
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 3.6e-94 349.0 277 65.7
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 3.6e-94 349.0 286 63.6
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 6.2e-94 348.2 300 62.7
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.1e-93 347.4 285 61.8
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 1.1e-93 347.4 257 67.7
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.1e-93 347.4 267 69.3
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.4e-93 347.1 255 68.6
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 2.4e-93 346.3 253 65.6
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 3.1e-93 345.9 308 61.4
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 6.9e-93 344.7 256 69.1
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 8.9e-93 344.4 267 68.2
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 2.0e-92 343.2 270 64.1
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 3.4e-92 342.4 254 67.7
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 4.4e-92 342.0 255 70.2
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 4.4e-92 342.0 266 66.9
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 7.6e-92 341.3 257 66.1
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.7e-91 340.1 271 66.8
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 2.2e-91 339.7 297 60.6
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.9e-91 339.3 269 63.9
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.9e-91 338.6 269 63.6
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 6.4e-91 338.2 296 59.5
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 6.4e-91 338.2 296 59.5
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 8.4e-91 337.8 296 58.1
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.4e-90 337.0 300 60.0
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.4e-90 337.0 266 63.5
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.4e-90 337.0 257 65.4
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.9e-90 336.7 256 68.0
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 3.2e-90 335.9 318 60.7
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 9.3e-90 334.3 255 68.2
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.2e-89 334.0 254 67.3
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 2.1e-89 333.2 241 71.0
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 3.5e-89 332.4 255 67.8
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 3.5e-89 332.4 265 61.9
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 4.6e-89 332.0 264 64.0
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 6.0e-89 331.6 296 59.5
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 6.0e-89 331.6 261 64.4
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 6.0e-89 331.6 236 70.3
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-88 330.1 295 58.6
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.7e-88 330.1 251 64.9
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 3.9e-88 328.9 275 62.9
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 6.6e-88 328.2 274 59.1
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 1.5e-87 327.0 292 60.6
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.5e-87 326.2 254 63.0
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 3.3e-87 325.9 254 63.0
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 3.3e-87 325.9 236 69.9
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 4.3e-87 325.5 244 68.9
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 5.6e-87 325.1 285 58.6
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 5.6e-87 325.1 252 65.5
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 5.6e-87 325.1 315 56.8
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 9.6e-87 324.3 360 50.6
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.6e-86 323.6 245 66.1
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 2.1e-86 323.2 241 68.5
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 4.8e-86 322.0 287 57.5
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 6.2e-86 321.6 287 57.1
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 1.8e-85 320.1 310 54.5
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.8e-85 320.1 294 57.8
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.4e-85 319.7 250 62.4
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 3.1e-85 319.3 293 56.3
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 3.1e-85 319.3 293 56.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 2.6e-84 316.2 236 65.7
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 4.5e-84 315.5 293 56.0
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.9e-82 310.1 237 64.6
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.4e-82 309.7 265 58.5
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 3.0e-80 302.8 252 61.5
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 8.7e-80 301.2 246 60.6
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 3.3e-79 299.3 246 63.0
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 5.6e-79 298.5 371 47.4
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 9.6e-79 297.7 217 70.5
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.1e-78 296.6 275 60.0
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 5.3e-77 292.0 239 64.9
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 5.3e-77 292.0 268 57.1
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 9.0e-77 291.2 270 57.4
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 9.0e-77 291.2 255 60.0
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 6.4e-75 285.0 265 58.9
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 4.2e-74 282.3 219 68.0
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.2e-73 280.8 241 58.9
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.3e-72 276.6 295 52.5
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 3.0e-72 276.2 314 51.0
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.9e-72 275.8 335 49.9
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.9e-71 273.5 263 59.7
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.3e-70 270.8 337 49.0
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.4e-69 266.5 250 54.8
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 5.0e-59 232.3 221 54.8
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 8.7e-56 221.5 296 40.9
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.1e-55 221.1 166 63.9
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.5e-55 219.9 300 41.3
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.2e-54 216.9 457 34.6
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 3.1e-53 213.0 259 45.6
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 5.9e-52 208.8 236 44.1
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.0e-51 208.0 250 43.6
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 7.9e-49 198.4 187 57.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 3.9e-48 196.1 135 69.6
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.2e-46 190.3 312 40.1
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 5.0e-43 179.1 127 69.3
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 9.7e-39 164.9 177 46.3
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 5.9e-36 155.6 123 62.6
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 6.5e-27 125.6 163 42.9
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 4.5e-20 102.8 73 68.5
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 3.8e-19 99.8 93 46.2
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 8.6e-19 98.6 76 63.2
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 5.7e-15 85.9 72 59.7
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.7e-12 77.0 233 30.0
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 3.5e-12 76.6 69 56.5
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 5.0e-11 72.8 70 47.1
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 4.0e-08 63.2 50 66.0
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 5.2e-08 62.8 51 54.9
Oeu028866.1 Olea europaea HOM05D002234 ORTHO05D002254 1.2e-07 61.6 195 31.8
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 7.5e-07 58.9 192 27.6
CAN.G726.26 Capsicum annuum HOM05D002234 ORTHO05D002254 7.5e-07 58.9 188 28.7
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 1.3e-06 58.2 87 49.4
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 2.2e-06 57.4 199 25.6


User provided reference genes

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