Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 4315.8 2175 100.0
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 4212.1 2175 97.7
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 3731.4 2192 86.4
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 3621.6 2198 83.6
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 3513.0 2215 81.2
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2761.1 2237 64.1
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2706.4 2234 63.1
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2701.8 2214 63.5
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2650.2 2248 62.2
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2649.8 2232 62.4
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2638.6 2228 62.3
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2628.6 2229 62.1
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2628.2 2228 62.0
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2615.1 2226 61.3
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2611.6 2248 61.5
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2602.0 2228 61.4
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2601.2 2223 60.8
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2584.7 2235 60.3
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2573.9 2221 60.4
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2568.5 2234 60.1
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2563.1 2228 60.0
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2559.6 2234 59.8
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2553.5 2229 60.6
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2549.6 2229 60.1
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2528.1 2230 59.7
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2527.3 2227 60.2
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2520.3 2229 60.1
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2518.8 2237 58.6
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2515.0 2236 59.5
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2514.2 2229 59.6
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2505.7 2229 59.0
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2505.3 2217 59.0
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2503.0 2229 59.1
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2498.4 2231 58.0
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2491.5 2207 59.4
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2481.8 2240 58.5
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2465.3 2221 58.0
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2454.9 2219 57.7
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2434.1 2224 57.2
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2426.4 2217 57.6
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2419.0 2245 57.2
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2418.3 2210 57.2
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2414.0 2236 57.4
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2412.1 2237 57.4
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2409.8 2220 58.7
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2408.3 2234 57.3
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2404.0 2217 57.5
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2398.6 2233 57.0
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2397.1 2221 57.3
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2383.6 2214 58.0
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2379.0 2236 57.8
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2378.2 2226 57.9
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2377.1 2234 57.5
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2359.7 2233 56.6
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2356.6 2237 56.1
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2356.3 2258 56.7
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2348.5 2213 56.4
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2334.3 2241 56.4
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2333.9 2220 56.3
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2332.4 2222 56.6
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2320.8 2252 55.9
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2320.0 2230 56.5
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2316.2 2237 56.4
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2306.2 2228 56.4
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2304.2 2220 56.4
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2298.1 2232 56.7
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2293.1 2238 55.2
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2263.0 2243 54.9
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2257.6 2211 55.4
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2251.1 2210 55.3
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2243.8 2215 55.4
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2239.2 2213 54.9
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2239.2 2213 54.9
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2238.8 2216 55.0
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2238.4 2211 55.5
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2229.9 2208 54.9
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2229.9 2208 54.9
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2192.9 2323 52.6
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2123.2 2210 53.1
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2118.2 1903 57.9
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2107.8 1833 60.3
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2105.9 1824 59.6
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2104.3 1818 60.5
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2092.4 2043 56.0
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2055.8 2322 49.5
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2038.1 2231 51.1
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2028.1 2216 50.9
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1961.8 1717 59.5
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1872.4 2205 49.1
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1755.0 2397 44.1
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1714.1 1425 63.4
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1551.2 1696 51.6
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1508.0 1391 58.5
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1450.3 2181 41.7
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1443.7 2339 39.3
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1405.2 2358 38.3
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1337.8 2233 37.5
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1222.2 1116 58.7
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1178.7 1013 59.8
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1174.8 1207 53.2
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1123.2 1063 57.1
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1097.8 937 61.9
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1087.8 1412 46.2
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 1.8e-270 937.6 783 63.0
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.4e-259 901.4 1016 51.1
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 2.2e-257 894.0 2460 29.8
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 4.1e-219 766.9 862 48.6
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.7e-212 745.0 1364 37.2
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 4.9e-204 716.8 725 54.1
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 2.9e-172 611.3 995 40.0
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 4.3e-152 544.3 2366 26.1
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 4.5e-125 454.5 441 50.8
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 5.7e-120 437.6 315 74.3
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 4.7e-106 391.3 301 69.4
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 8.3e-103 380.6 370 55.7
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 2.1e-98 365.9 229 81.7
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 1.6e-93 349.7 316 62.7
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 1.5e-80 306.6 229 70.7
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 2.2e-79 302.8 269 63.2
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 1.4e-73 283.5 745 29.5
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 1.8e-73 283.1 289 56.4
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-59 237.3 219 61.6
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 3.3e-51 209.1 133 77.4
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 9.9e-48 197.6 177 60.5
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 3.4e-40 172.6 146 61.6
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 4.8e-34 152.1 97 75.3
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 3.2e-30 139.4 473 27.7
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 5.7e-27 128.6 121 53.7
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 2.8e-26 126.3 253 34.0
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 8.5e-23 114.8 106 59.4
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.4e-20 107.5 113 53.1
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 3.2e-14 86.3 869 20.3
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.4e-12 80.9 100 40.0


User provided reference genes

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