Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g059030.4 Solanum lycopersicum HOM05D006621 ORTHO05D008425 3.7e-166 588.2 309 100.0
Sopen03g013060 Solanum pennellii HOM05D006621 ORTHO05D008425 2.5e-162 575.5 309 97.4
CAN.G691.11 Capsicum annuum HOM05D006621 ORTHO05D008425 3.2e-141 505.4 308 87.7
Nitab4.5_0003572g0080 Nicotiana tabacum HOM05D006621 ORTHO05D008425 3.5e-140 501.9 308 87.0
Nitab4.5_0000016g0290 Nicotiana tabacum HOM05D006621 ORTHO05D008425 6.6e-139 497.7 308 86.7
Dinv24092 Davidia involucrata HOM05D006621 ORTHO05D008425 1.9e-106 389.8 314 69.7
Cc00_g14610 Coffea canephora HOM05D006621 ORTHO05D008425 1.1e-104 384.0 310 68.7
CSS0004967 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D008425 2.9e-102 375.9 313 67.4
MSTRG.6466 Avicennia marina HOM05D006621 ORTHO05D008425 2.1e-100 369.8 313 66.5
Ciclev10011385m.g Citrus clementina HOM05D006621 ORTHO05D008425 1.3e-99 367.1 293 68.3
Migut.J01819 Erythranthe guttata HOM05D006621 ORTHO05D008425 1.3e-99 367.1 296 68.6
EL10Ac3g06943 Beta vulgaris HOM05D006621 ORTHO05D008425 2.3e-99 366.3 284 70.1
GSVIVG01033523001 Vitis vinifera HOM05D006621 ORTHO05D008425 2.3e-99 366.3 309 66.0
Lju124A29T46 Lonicera japonica HOM05D006621 ORTHO05D008425 3.0e-99 365.9 298 68.5
Hund19192 Selenicereus undatus HOM05D006621 ORTHO05D008425 8.7e-99 364.4 308 66.6
Oeu008113.1 Olea europaea HOM05D006621 ORTHO05D008425 1.3e-97 360.5 312 66.0
Sc13g0002140 Simmondsia chinensis HOM05D006621 ORTHO05D008425 2.1e-97 359.8 295 68.5
Manes.09G032200 Manihot esculenta HOM05D006621 ORTHO05D008425 4.8e-97 358.6 301 66.1
AUR62024325 Chenopodium quinoa HOM05D006621 ORTHO05D008425 6.2e-97 358.2 305 64.9
RcHm_v2.0_Chr3g0480241 Rosa chinensis HOM05D006621 ORTHO05D008425 8.2e-97 357.8 308 64.9
Hma1.2p1_0005F.1_g004290 Hydrangea macrophylla HOM05D006621 ORTHO05D008425 1.1e-96 357.5 307 65.5
Glyma.02G176900 Glycine max HOM05D006621 ORTHO05D008425 1.8e-96 356.7 308 64.6
MD14G1060600 Malus domestica HOM05D006621 ORTHO05D008425 1.8e-96 356.7 307 65.1
FvH4_6g22670 Fragaria vesca HOM05D006621 ORTHO05D008425 4.1e-96 355.5 297 66.0
FAN14G1344 Fragaria x ananassa HOM05D006621 ORTHO05D008425 4.1e-96 355.5 297 66.0
FAN05G4150 Fragaria x ananassa HOM05D006621 ORTHO05D008425 1.2e-95 354.0 297 66.3
Actinidia38574 Actinidia chinensis HOM05D006621 ORTHO05D008425 2.0e-95 353.2 312 66.0
Prupe.7G073900 Prunus persica HOM05D006621 ORTHO05D008425 2.0e-95 353.2 307 64.2
Rhsim04G0097900 Rhododendron simsii HOM05D006621 ORTHO05D008425 2.0e-95 353.2 313 63.6
Gohir.D09G123264 Gossypium hirsutum HOM05D006621 ORTHO05D008425 2.6e-95 352.8 292 65.1
FAN02G3731 Fragaria x ananassa HOM05D006621 ORTHO05D008425 3.4e-95 352.4 297 66.0
Gorai.006G141700 Gossypium raimondii HOM05D006621 ORTHO05D008425 3.4e-95 352.4 292 65.1
Nn1g01946 Nelumbo nucifera HOM05D006621 ORTHO05D008425 4.5e-95 352.1 292 66.8
PGR142G0547 Punica granatum HOM05D006621 ORTHO05D008425 4.5e-95 352.1 309 61.8
Atru.chr8.1052 Acer truncatum HOM05D006621 ORTHO05D008425 2.2e-94 349.7 310 63.2
QL07p023160 Quercus lobata HOM05D006621 ORTHO05D008425 2.2e-94 349.7 311 62.4
Ah.13g076080 Amaranthus hybridus HOM05D006621 ORTHO05D008425 2.9e-94 349.4 291 64.9
ClCG04G002310 Citrullus lanatus HOM05D006621 ORTHO05D008425 1.1e-93 347.4 306 62.4
PSO339G6474 Papaver somniferum HOM05D006621 ORTHO05D008425 1.1e-93 347.4 298 63.1
Duzib128G0108 Durio zibethinus HOM05D006621 ORTHO05D008425 4.2e-93 345.5 310 61.0
FAN09G2006 Fragaria x ananassa HOM05D006621 ORTHO05D008425 5.5e-93 345.1 297 64.6
Peaxi162Scf00258g00117 Petunia axillaris HOM05D006621 ORTHO05D008425 5.5e-93 345.1 225 81.3
PSO384G1846 Papaver somniferum HOM05D006621 ORTHO05D008425 9.3e-93 344.4 302 62.9
Cfa016900 Carpinus fangiana HOM05D006621 ORTHO05D008425 1.2e-92 344.0 303 63.7
CiPaw.09G032000 Carya illinoinensis HOM05D006621 ORTHO05D008425 2.7e-92 342.8 293 65.5
COL.COLO4_36135 Corchorus olitorius HOM05D006621 ORTHO05D008425 6.1e-92 341.7 304 64.5
Sed0013147 Sechium edule HOM05D006621 ORTHO05D008425 6.1e-92 341.7 286 65.0
CsaV3_4G030430 Cucumis sativus L. HOM05D006621 ORTHO05D008425 7.9e-92 341.3 306 61.1
Gohir.A09G126800 Gossypium hirsutum HOM05D006621 ORTHO05D008425 1.3e-91 340.5 292 63.0
ECA248G1459 Erigeron canadensis HOM05D006621 ORTHO05D008425 1.8e-91 340.1 306 62.4
arahy.Tifrunner.gnm1.ann1.G78CS5 Arachis hypogaea HOM05D006621 ORTHO05D008425 3.0e-91 339.3 301 62.5
THA.LOC104799308 Tarenaya hassleriana HOM05D006621 ORTHO05D008425 3.9e-91 339.0 291 62.9
Lsat_1_v5_gn_5_164180 Lactuca sativa HOM05D006621 ORTHO05D008425 1.1e-90 337.4 304 62.2
Potri.006G059500 Populus trichocarpa HOM05D006621 ORTHO05D008425 1.1e-90 337.4 296 62.8
Thecc.05G168600 Theobroma cacao HOM05D006621 ORTHO05D008425 1.1e-90 337.4 310 60.6
Aqoxy1G00197 Aquilegia oxysepala HOM05D006621 ORTHO05D008425 2.5e-90 336.3 302 61.3
HanXRQChr01g0009671 Helianthus annuus HOM05D006621 ORTHO05D008425 5.7e-90 335.1 293 63.5
vmacro09106 Vaccinium macrocarpon HOM05D006621 ORTHO05D008425 7.4e-90 334.7 314 62.4
FAN14G0291 Fragaria x ananassa HOM05D006621 ORTHO05D008425 1.3e-89 334.0 297 63.6
Glyma.10G091600 Glycine max HOM05D006621 ORTHO05D008425 8.2e-89 331.3 287 63.8
Haze_19963 Corylus avellana HOM05D006621 ORTHO05D008425 1.8e-88 330.1 298 62.4
TAR636G2274 Trochodendron aralioides HOM05D006621 ORTHO05D008425 4.1e-88 328.9 303 62.0
Ca_26117_v3 Cicer arietinum L. HOM05D006621 ORTHO05D008425 6.9e-88 328.2 299 62.9
CANSAT64G2439 Cannabis sativa HOM05D006621 ORTHO05D008425 2.0e-87 326.6 299 62.2
Lalb_Chr21g0317041 Lupinus albus HOM05D006621 ORTHO05D008425 2.6e-87 326.2 294 62.2
BcaC06g32538 Brassica carinata HOM05D006621 ORTHO05D008425 4.5e-87 325.5 291 64.3
TWI74G0211 Tripterygium wilfordii HOM05D006621 ORTHO05D008425 4.5e-87 325.5 290 62.8
Carub.0006s0572 Capsella rubella HOM05D006621 ORTHO05D008425 5.9e-87 325.1 291 62.5
TPR.G24898 Trifolium pratense HOM05D006621 ORTHO05D008425 1.0e-86 324.3 297 61.3
CARHR206340 Cardamine hirsuta HOM05D006621 ORTHO05D008425 1.7e-86 323.6 291 62.5
Sp6g36030 Schrenkiella parvula HOM05D006621 ORTHO05D008425 1.7e-86 323.6 290 62.4
MELO3C008903.2 Cucumis melo HOM05D006621 ORTHO05D008425 3.8e-86 322.4 306 58.8
Eucgr.K01826 Eucalyptus grandis HOM05D006621 ORTHO05D008425 5.0e-86 322.0 303 60.1
Phvul.007G257900 Phaseolus vulgaris HOM05D006621 ORTHO05D008425 8.5e-86 321.2 285 62.8
AL6G16950 Arabidopsis lyrata HOM05D006621 ORTHO05D008425 1.1e-85 320.9 287 63.1
Lj5g0023768 Lotus japonicus HOM05D006621 ORTHO05D008425 1.4e-85 320.5 296 61.5
Medtr1g053520 Medicago truncatula HOM05D006621 ORTHO05D008425 4.2e-85 318.9 292 62.3
Aa31LG11G7690 Aethionema arabicum HOM05D006621 ORTHO05D008425 7.2e-85 318.2 299 61.5
AT5G06830 Arabidopsis thaliana HOM05D006621 ORTHO05D008425 1.6e-84 317.0 291 61.2
VMungo0720G2363 Vigna mungo HOM05D006621 ORTHO05D008425 4.6e-84 315.5 308 59.1
Sabra06G0042800 Salix brachista HOM05D006621 ORTHO05D008425 1.8e-83 313.5 316 58.5
Thhalv10013160m.g Eutrema salsugineum HOM05D006621 ORTHO05D008425 3.9e-83 312.4 290 60.7
SalBow6G6334 Salvia bowleyana HOM05D006621 ORTHO05D008425 3.3e-82 309.3 292 62.3
arahy.Tifrunner.gnm1.ann1.ZJT11U Arachis hypogaea HOM05D006621 ORTHO05D008425 1.7e-81 307.0 373 50.7
AUR62012064 Chenopodium quinoa HOM05D006621 ORTHO05D008425 1.5e-79 300.4 266 62.4
Zm00001eb381660 Zea mays HOM05D006621 ORTHO05D008425 2.9e-78 296.2 302 57.3
Zm00001eb381720 Zea mays HOM05D006621 ORTHO05D008425 2.9e-78 296.2 302 57.3
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 4.2e-77 292.4 282 59.6
CDE10G0898 Ceratophyllum demersum HOM05D006621 ORTHO05D008425 5.5e-77 292.0 295 56.3
MD12G1060400 Malus domestica HOM05D006621 ORTHO05D008425 3.9e-75 285.8 252 65.5
Os06g0320100 Oryza sativa ssp. japonica HOM05D006621 ORTHO05D008425 3.9e-75 285.8 295 55.6
HPP92_015468 Vanilla planifolia HOM05D006621 ORTHO05D008425 4.4e-74 282.3 323 50.2
CAN.G654.6 Capsicum annuum HOM05D006621 ORTHO05D008425 4.8e-73 278.9 178 84.3
A10p29540 Brassica napus HOM05D006621 ORTHO05D008425 2.0e-71 273.5 287 55.4
BraA10t44997Z Brassica rapa HOM05D006621 ORTHO05D008425 2.0e-71 273.5 287 55.4
BcaC06g32399 Brassica carinata HOM05D006621 ORTHO05D008425 5.0e-70 268.9 291 55.0
C09p69910 Brassica napus HOM05D006621 ORTHO05D008425 5.0e-70 268.9 291 55.0
BolC9t59734H Brassica oleracea HOM05D006621 ORTHO05D008425 5.0e-70 268.9 291 55.0
ATR0605G120 Amborella trichopoda HOM05D006621 ORTHO05D008425 4.2e-69 265.8 297 52.2
Eucgr.D02420 Eucalyptus grandis HOM05D006621 ORTHO05D008425 7.0e-56 221.9 273 49.1
Psat6g126120 Pisum sativum HOM05D006621 ORTHO05D008425 2.8e-49 199.9 214 54.2
Oeu033745.1 Olea europaea HOM05D006621 ORTHO05D008425 1.3e-46 191.0 174 63.2
Mapoly0080s0041 Marchantia polymorpha HOM05D006621 ORTHO05D008425 1.2e-44 184.5 315 37.1
AagrBONN_evm.TU.Sc2ySwM_228.2467 Anthoceros agrestis HOM05D006621 ORTHO05D008425 2.3e-43 180.3 277 41.5
Pp3c23_21740 Physcomitrium patens HOM05D006621 ORTHO05D008425 3.0e-38 163.3 224 44.6
SMO134G0088 Selaginella moellendorffii HOM05D006621 ORTHO05D008425 3.0e-38 163.3 167 50.9
Lsat_1_v5_gn_1_107121 Lactuca sativa HOM05D006621 ORTHO05D008425 6.2e-36 155.6 207 48.3
RcHm_v2.0_Chr3g0476251 Rosa chinensis HOM05D006621 ORTHO05D008425 1.4e-32 144.4 153 59.5
CBR_g3749 Chara braunii HOM05D006621 ORTHO05D008425 2.0e-31 140.6 167 44.3
Cpa.g.sc85.87 Carica papaya HOM05D006621 ORTHO05D008425 3.4e-26 123.2 154 42.9
CSS0033542 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D043305 1.8e-11 74.3 54 75.9
Cre01.g047229 Chlamydomonas reinhardtii HOM05D006621 ORTHO05D008425 7.6e-10 68.9 170 28.8
DCAR_019796 Daucus carota HOM05D006621 ORTHO05D008425 1.1e-08 65.1 40 77.5
DCAR_028612 Daucus carota HOM05D006621 ORTHO05D008425 7.1e-08 62.4 62 56.5
THA.LOC104799305 Tarenaya hassleriana HOM05D006621 ORTHO05D008425 6.6e-06 55.8 61 47.5


User provided reference genes

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