Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 1.9e-223 778.9 395 100.0
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 3.7e-211 738.0 395 94.4
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 1.1e-199 699.9 362 98.1
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 2.5e-183 645.6 401 84.0
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 4.7e-166 588.2 360 84.2
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 4.0e-165 585.1 357 85.4
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 1.8e-157 559.7 404 74.5
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 4.3e-151 538.5 409 68.0
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 4.8e-150 535.0 364 75.5
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 1.4e-149 533.5 357 75.4
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 4.5e-148 528.5 378 70.9
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 5.8e-148 528.1 370 72.4
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 7.6e-148 527.7 365 72.3
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 1.7e-147 526.6 352 74.4
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 6.4e-147 524.6 369 71.3
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 1.9e-146 523.1 394 67.8
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 1.9e-146 523.1 351 75.2
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 1.9e-146 523.1 380 68.7
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 2.4e-146 522.7 355 73.0
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 7.1e-146 521.2 366 72.7
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 9.3e-146 520.8 355 74.6
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 1.6e-145 520.0 365 72.6
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 2.7e-145 519.2 355 75.8
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 4.6e-145 518.5 391 69.1
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 6.0e-145 518.1 356 71.9
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 6.0e-145 518.1 357 70.9
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 1.0e-144 517.3 353 72.5
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 8.7e-144 514.2 355 72.1
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 1.5e-143 513.5 352 72.7
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 1.5e-143 513.5 357 71.1
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 1.9e-143 513.1 355 73.8
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 1.9e-143 513.1 352 72.4
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 4.3e-143 511.9 359 72.1
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 4.3e-143 511.9 366 69.7
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 5.6e-143 511.5 393 67.7
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 1.3e-142 510.4 395 67.6
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.6e-142 510.0 376 68.4
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 2.8e-142 509.2 352 73.9
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 2.8e-142 509.2 353 70.8
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 2.4e-141 506.1 354 70.6
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.5e-140 503.4 376 68.1
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 4.5e-140 501.9 367 68.7
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 7.6e-140 501.1 408 63.7
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 7.6e-140 501.1 375 69.3
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 7.6e-140 501.1 359 68.8
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 7.6e-140 501.1 379 68.3
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 4.9e-139 498.4 370 67.6
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 6.5e-139 498.0 369 67.2
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 6.5e-139 498.0 368 69.3
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.4e-138 496.9 380 67.6
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 2.5e-138 496.1 379 67.0
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 1.2e-137 493.8 355 69.3
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 2.1e-137 493.0 351 68.7
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 7.9e-137 491.1 359 68.0
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 7.9e-137 491.1 407 63.6
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.0e-136 490.7 362 69.6
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 1.0e-136 490.7 353 69.7
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 3.0e-136 489.2 354 70.6
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 3.9e-136 488.8 379 67.0
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 6.7e-136 488.0 345 72.5
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 6.7e-136 488.0 414 62.8
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 1.3e-134 483.8 355 69.6
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 1.6e-134 483.4 342 71.9
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 2.2e-134 483.0 355 67.0
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.1e-133 480.7 361 68.1
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 5.3e-133 478.4 361 67.3
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 4.5e-132 475.3 380 65.5
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 2.2e-131 473.0 400 61.2
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 2.9e-131 472.6 354 64.7
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 2.9e-131 472.6 397 61.5
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 3.8e-131 472.2 360 64.7
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 3.8e-131 472.2 397 61.2
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 1.1e-130 470.7 369 64.8
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 1.4e-130 470.3 361 66.5
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 5.5e-130 468.4 355 64.5
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 7.2e-130 468.0 367 63.5
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 7.2e-130 468.0 362 68.2
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 1.6e-129 466.8 340 70.0
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 2.7e-129 466.1 367 63.5
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 3.6e-129 465.7 365 65.5
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 6.1e-129 464.9 349 68.2
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 6.1e-129 464.9 355 63.7
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 6.1e-129 464.9 355 63.7
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 6.1e-129 464.9 312 73.4
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 8.8e-128 461.1 356 65.2
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 1.1e-127 460.7 359 63.5
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 8.2e-126 454.5 338 68.3
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 2.6e-124 449.5 353 65.4
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 5.9e-124 448.4 354 64.7
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 3.0e-120 436.0 328 68.3
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 5.3e-117 425.2 320 68.8
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 5.3e-109 398.7 321 62.3
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 8.5e-107 391.3 272 69.9
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.9e-106 390.2 351 54.7
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 3.2e-106 389.4 368 52.2
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 7.0e-101 371.7 356 51.7
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 8.0e-97 358.2 356 51.7
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 5.2e-88 328.9 264 61.0
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 9.2e-85 318.2 385 52.2
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 2.0e-84 317.0 257 65.8
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.3e-83 313.5 337 49.0
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 4.7e-81 305.8 259 58.3
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 7.0e-77 292.0 186 78.5
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 8.3e-70 268.5 184 69.0
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 5.4e-69 265.8 367 42.8
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 9.2e-69 265.0 184 72.3
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 4.6e-68 262.7 415 37.3
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 4.6e-68 262.7 415 37.3
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 6.2e-65 252.3 415 35.9
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 4.4e-55 219.5 342 40.6
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.9e-54 216.9 527 29.2
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 7.1e-53 212.2 209 51.7
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 1.4e-45 188.0 397 34.5
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 2.8e-41 173.7 156 54.5
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 6.9e-40 169.1 155 56.1
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 4.2e-37 159.8 146 53.4
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 2.4e-24 117.5 61 91.8
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 3.3e-18 97.1 68 72.1
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 3.3e-18 97.1 71 64.8
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 3.1e-16 90.5 62 72.6
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 6.9e-16 89.4 172 34.9
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 6.9e-16 89.4 178 32.6
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 5.9e-15 86.3 65 64.6
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 7.7e-15 85.9 170 34.1
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 6.5e-14 82.8 171 32.7
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 3.9e-11 73.6 92 47.8


User provided reference genes

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