Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 0.0e+00 1186.0 660 100.0
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 7.1e-308 1060.1 653 92.8
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 3.7e-280 968.0 644 80.9
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.3e-269 932.9 631 79.2
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 1.1e-215 753.8 610 69.5
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 4.6e-214 748.4 493 80.9
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.2e-209 733.8 626 63.9
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.6e-209 732.6 628 63.7
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 1.2e-206 723.8 589 65.9
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 3.9e-205 718.8 615 63.4
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 9.6e-204 714.1 658 59.6
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.3e-203 713.8 623 62.1
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 2.1e-203 713.0 655 60.2
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.6e-203 712.2 632 60.8
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 4.8e-203 711.8 679 58.5
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 3.1e-202 709.1 669 58.6
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 1.5e-201 706.8 647 60.4
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.4e-199 700.3 643 60.3
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 3.2e-199 699.1 629 60.9
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 5.4e-199 698.4 628 61.1
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.0e-197 694.1 621 61.4
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.8e-197 693.3 653 59.6
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 3.9e-197 692.2 627 59.5
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 4.3e-196 688.7 628 60.0
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 2.8e-195 686.0 608 60.7
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 2.8e-195 686.0 611 60.7
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 2.4e-194 682.9 629 59.9
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 3.4e-193 679.1 610 60.8
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 1.7e-192 676.8 627 60.3
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 2.9e-192 676.0 613 60.4
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 4.9e-192 675.2 639 59.3
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 6.4e-192 674.9 612 59.8
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.1e-191 674.1 614 60.6
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 3.2e-191 672.5 632 58.1
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 4.2e-191 672.2 629 59.5
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 4.2e-191 672.2 616 59.9
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 4.2e-191 672.2 619 59.9
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 5.5e-191 671.8 627 59.0
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 5.5e-191 671.8 611 60.6
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 1.2e-190 670.6 649 56.9
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 1.2e-190 670.6 637 58.1
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 2.7e-190 669.5 616 57.8
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 3.5e-190 669.1 619 59.3
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.0e-189 667.5 619 59.9
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.3e-189 667.2 621 57.0
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 1.1e-188 664.1 622 62.1
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.1e-188 664.1 612 59.2
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.5e-188 662.9 648 56.5
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.6e-187 660.2 665 57.1
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.1e-186 657.5 665 57.0
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.8e-186 656.8 688 55.2
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 2.4e-186 656.4 619 59.1
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 4.0e-186 655.6 612 60.0
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 9.0e-186 654.4 643 55.5
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.5e-185 652.1 660 56.4
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 6.0e-182 641.7 609 56.7
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.0e-181 641.0 611 59.1
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 5.1e-181 638.6 629 57.9
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.1e-180 637.5 617 57.1
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 9.7e-180 634.4 684 53.4
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 3.7e-179 632.5 625 55.5
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 2.4e-178 629.8 632 56.0
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 4.1e-178 629.0 617 56.9
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 1.2e-177 627.5 663 54.1
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.5e-177 627.1 623 55.7
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 1.5e-177 627.1 612 57.0
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 2.6e-177 626.3 649 55.3
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 3.7e-171 605.9 624 53.7
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 6.3e-171 605.1 625 54.9
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.0e-169 600.1 824 45.8
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 3.4e-169 599.4 621 53.1
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 4.5e-169 599.0 615 54.6
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 5.9e-169 598.6 624 53.4
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 7.7e-169 598.2 606 57.4
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 7.7e-169 598.2 557 58.9
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.5e-167 593.2 703 50.6
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 9.4e-167 591.3 621 52.8
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.6e-166 590.5 621 53.0
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 3.6e-166 589.3 621 52.3
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.8e-165 587.0 621 53.3
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 6.7e-165 585.1 613 53.3
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 3.3e-164 582.8 643 49.9
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 5.7e-164 582.0 621 52.2
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.6e-161 573.2 622 51.3
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 3.4e-161 572.8 561 56.7
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 9.4e-159 564.7 644 53.1
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 9.4e-159 564.7 644 53.1
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 5.7e-156 555.4 621 50.6
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 7.7e-153 545.0 647 49.8
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 3.8e-152 542.7 652 48.5
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.2e-150 537.7 608 49.2
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 1.8e-149 533.9 621 50.7
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 1.3e-147 527.7 621 48.3
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 5.5e-143 512.3 511 56.8
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 2.3e-141 506.9 654 46.3
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 1.1e-138 498.0 610 47.9
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 1.7e-136 490.7 546 52.4
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 5.2e-133 479.2 609 47.1
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 4.5e-129 466.1 622 46.5
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 4.5e-129 466.1 622 46.5
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 4.5e-129 466.1 622 46.5
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 4.7e-126 456.1 607 42.3
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.8e-125 452.2 523 51.1
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.1e-122 444.9 302 73.8
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 1.5e-119 434.5 685 39.0
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.5e-116 424.5 494 51.4
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 4.7e-110 402.9 613 41.1
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 1.5e-108 397.9 574 41.3
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 4.9e-99 366.3 458 46.5
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 7.1e-98 362.5 324 56.5
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 1.1e-93 348.6 288 63.9
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 6.4e-91 339.3 533 42.6
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 8.4e-67 259.2 232 62.5
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.9e-64 250.4 172 73.8
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 5.1e-48 196.8 128 75.0
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.8e-46 190.3 117 77.8
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.1e-37 162.5 114 67.5
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 3.1e-37 161.0 224 45.5
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 3.5e-36 157.5 99 73.7
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 6.3e-30 136.7 86 72.1
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 7.0e-29 133.3 233 34.8
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 1.0e-24 119.4 103 59.2
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 1.0e-24 119.4 601 24.0
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.4e-24 119.0 74 74.3
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 4.0e-24 117.5 89 65.2
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 1.2e-17 95.9 151 36.4
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 3.7e-14 84.3 406 23.2
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 2.7e-12 78.2 254 27.2
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 3.5e-12 77.8 51 66.7
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 6.6e-11 73.6 47 74.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 8.6e-11 73.2 57 57.9
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 2.3e-08 65.1 70 50.0


User provided reference genes

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