Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 9.6e-231 803.1 405 100.0
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.8e-229 798.9 405 99.5
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 3.1e-221 771.5 408 95.3
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 1.4e-210 736.1 410 89.8
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 6.5e-203 710.7 408 86.8
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.0e-200 701.8 408 86.5
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 7.0e-181 637.5 401 80.5
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 1.0e-179 633.6 409 75.3
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 9.5e-178 627.1 401 75.8
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.7e-177 624.8 401 75.6
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.3e-176 622.5 401 75.3
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 5.2e-176 621.3 408 75.5
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 7.0e-173 610.9 408 73.3
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 5.9e-172 607.8 408 73.3
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 5.9e-172 607.8 401 73.1
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.0e-171 607.1 403 73.4
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 1.7e-171 606.3 408 72.3
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 2.3e-171 605.9 408 71.8
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 3.8e-171 605.1 407 72.7
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 1.5e-170 603.2 408 71.1
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 1.5e-170 603.2 408 71.1
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.9e-170 602.8 407 72.5
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 3.3e-170 602.1 401 71.8
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 4.3e-170 601.7 408 70.8
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 9.5e-170 600.5 401 72.1
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.2e-169 600.1 408 72.1
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.6e-169 599.7 405 71.1
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.6e-169 599.7 407 71.7
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 2.3e-168 595.9 405 70.4
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 6.8e-168 594.3 409 69.4
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 1.2e-167 593.6 408 71.3
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.2e-167 593.6 408 71.6
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.5e-167 593.2 408 70.8
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 2.6e-167 592.4 408 71.3
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 3.4e-167 592.0 401 70.6
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.4e-167 592.0 401 70.6
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 3.4e-167 592.0 439 69.7
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 3.4e-167 592.0 408 71.1
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 6.4e-166 587.8 401 68.6
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 6.4e-166 587.8 409 71.6
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.1e-165 587.0 401 72.8
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 4.1e-165 585.1 408 70.1
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 4.1e-165 585.1 401 71.1
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 1.6e-164 583.2 408 69.1
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.6e-164 583.2 401 67.3
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 2.7e-164 582.4 408 71.3
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 5.9e-164 581.3 401 68.3
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.0e-163 580.5 408 69.9
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.0e-163 580.5 401 67.6
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 1.3e-163 580.1 409 70.9
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 1.3e-163 580.1 409 68.9
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 3.0e-163 578.9 411 68.1
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.9e-163 578.6 391 70.3
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.0e-163 578.2 408 70.1
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.5e-162 576.6 391 70.1
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 2.5e-162 575.9 407 69.8
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 9.5e-162 573.9 407 69.5
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 9.5e-162 573.9 407 69.5
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.6e-161 573.2 396 69.2
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 3.6e-161 572.0 408 68.4
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.8e-160 569.7 408 70.1
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 2.0e-159 566.2 401 70.6
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.0e-159 566.2 401 68.8
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 2.6e-159 565.8 401 69.1
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 4.4e-159 565.1 408 68.4
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.7e-158 563.1 412 70.6
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.7e-158 563.1 409 68.9
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 2.9e-158 562.4 423 66.2
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 7.0e-157 557.8 410 68.8
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 7.0e-157 557.8 401 68.6
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 9.2e-157 557.4 408 67.4
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 2.7e-156 555.8 402 67.4
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 2.7e-156 555.8 402 68.2
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 4.6e-156 555.1 401 68.6
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 7.8e-156 554.3 401 67.6
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 1.7e-155 553.1 408 67.6
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 1.7e-155 553.1 402 67.7
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 1.5e-154 550.1 397 66.2
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 3.3e-154 548.9 405 66.9
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 7.3e-154 547.7 397 66.5
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 9.5e-154 547.4 397 66.2
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 9.5e-154 547.4 397 67.0
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.2e-153 547.0 402 68.4
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 4.7e-153 545.0 351 73.8
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.4e-152 543.5 405 66.4
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.8e-152 543.1 405 66.4
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 2.3e-152 542.7 402 66.7
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.2e-151 540.4 402 66.4
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.6e-151 539.3 402 66.7
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 2.6e-151 539.3 397 67.0
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 3.4e-151 538.9 399 66.7
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 4.4e-151 538.5 398 65.8
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 5.8e-151 538.1 405 65.4
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 7.5e-151 537.7 405 66.7
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 7.5e-151 537.7 405 65.4
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 9.9e-151 537.3 353 73.4
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.3e-150 537.0 405 65.2
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.7e-150 536.6 391 67.3
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 3.7e-150 535.4 487 58.3
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 4.9e-150 535.0 407 65.4
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 4.1e-149 531.9 405 64.9
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 4.1e-149 531.9 405 64.9
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 4.1e-149 531.9 405 64.9
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.3e-147 526.9 401 65.1
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 1.9e-146 523.1 401 62.1
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 9.5e-146 520.8 397 64.0
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 4.7e-145 518.5 397 63.7
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 3.1e-144 515.8 397 66.2
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 4.0e-144 515.4 397 66.5
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 4.0e-144 515.4 397 63.2
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 9.9e-143 510.8 408 63.7
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 1.7e-142 510.0 397 62.7
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 1.2e-140 503.8 353 69.4
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 1.2e-140 503.8 405 62.0
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 3.5e-140 502.3 405 61.5
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 2.4e-136 489.6 313 75.1
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.0e-135 486.5 401 58.4
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 9.9e-135 484.2 398 61.1
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 8.7e-131 471.1 403 57.8
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.6e-129 466.8 401 58.1
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 6.9e-128 461.5 416 54.6
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 2.4e-120 436.4 401 56.6
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.5e-119 433.7 315 67.9
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 6.7e-107 391.7 378 53.4
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 7.4e-106 388.3 313 59.4
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 4.1e-104 382.5 267 71.2
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 2.7e-100 369.8 261 68.6
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.1e-98 364.4 415 47.7
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 2.5e-98 363.2 408 49.0
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.1e-96 355.9 412 51.5
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 4.5e-95 352.4 272 65.1
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 5.1e-91 339.0 413 45.3
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 3.9e-83 312.8 410 43.2
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 7.2e-77 292.0 253 59.3
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.1e-72 278.1 433 41.3
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 1.9e-69 267.3 176 74.4
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 2.7e-68 263.5 173 72.8
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 5.7e-66 255.8 185 66.5
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 7.0e-64 248.8 161 77.0
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.0e-59 233.4 213 55.4
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 2.5e-53 213.8 172 58.7
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.3e-53 213.0 188 58.0
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 2.9e-49 200.3 135 72.6
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 3.2e-48 196.8 346 36.4
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 9.2e-48 195.3 148 62.8
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 2.8e-44 183.7 112 76.8
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 2.4e-32 144.1 93 73.1
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 7.6e-26 122.5 96 65.6
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 5.4e-24 116.3 97 59.8
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 3.1e-19 100.5 268 29.1
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 1.6e-15 88.2 70 61.4
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 3.5e-15 87.0 84 51.2
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 2.3e-14 84.3 57 75.4


User provided reference genes

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