Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g051700.3 Solanum lycopersicum HOM05D017937 ORTHO05D023148 3.3e-107 391.7 200 100.0
Solyc07g021050.3 Solanum lycopersicum HOM05D017937 ORTHO05D023148 2.4e-41 172.9 156 65.4
Sopen07g009830 Solanum pennellii HOM05D017937 ORTHO05D023148 2.0e-35 153.3 88 94.3
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 1.7e-23 113.6 236 40.3
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 5.0e-23 112.1 227 41.4
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 5.6e-22 108.6 240 39.6
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 5.6e-22 108.6 240 39.6
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 7.3e-22 108.2 240 39.2
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 1.2e-21 107.5 240 39.2
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 2.3e-20 103.2 240 37.9
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 3.1e-20 102.8 268 36.2
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 3.1e-20 102.8 237 38.0
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 3.1e-20 102.8 234 38.0
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 4.0e-20 102.4 268 36.2
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 4.0e-20 102.4 268 36.2
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 4.0e-20 102.4 210 39.5
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 5.2e-20 102.1 239 37.2
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 5.2e-20 102.1 239 37.2
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 5.2e-20 102.1 268 36.2
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 5.2e-20 102.1 268 36.2
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 5.2e-20 102.1 268 36.2
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 5.2e-20 102.1 268 36.2
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 6.8e-20 101.7 268 36.2
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 6.8e-20 101.7 237 37.6
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 6.8e-20 101.7 240 37.5
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 6.8e-20 101.7 268 36.2
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 8.9e-20 101.3 232 37.9
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 8.9e-20 101.3 237 37.6
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 1.2e-19 100.9 268 35.8
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 1.2e-19 100.9 240 37.1
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 1.5e-19 100.5 240 35.8
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.5e-19 100.5 242 37.6
Haze_10317 Corylus avellana HOM05D002370 ORTHO05D003878 1.5e-19 100.5 240 37.1
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 1.5e-19 100.5 237 37.6
Gohir.A01G009500 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.5e-19 100.5 240 36.7
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.5e-19 100.5 240 36.7
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 2.0e-19 100.1 237 37.1
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 2.0e-19 100.1 231 38.1
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 2.0e-19 100.1 240 37.5
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 2.0e-19 100.1 240 37.1
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 2.6e-19 99.8 240 37.5
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 2.6e-19 99.8 240 37.1
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 2.6e-19 99.8 242 36.8
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 2.6e-19 99.8 206 39.3
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 2.6e-19 99.8 206 39.3
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 2.6e-19 99.8 235 37.9
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 2.6e-19 99.8 240 37.1
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 3.4e-19 99.4 234 37.2
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 3.4e-19 99.4 234 37.2
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 3.4e-19 99.4 234 37.2
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 3.4e-19 99.4 240 37.5
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 3.4e-19 99.4 211 37.9
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 4.4e-19 99.0 240 37.1
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 4.4e-19 99.0 240 37.1
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 5.8e-19 98.6 240 36.7
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 5.8e-19 98.6 239 36.8
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 9.9e-19 97.8 238 36.6
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 9.9e-19 97.8 238 36.6
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 9.9e-19 97.8 239 36.8
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 9.9e-19 97.8 240 36.2
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 9.9e-19 97.8 239 36.8
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 1.3e-18 97.4 268 35.4
Cpa.g.sc520.1 Carica papaya HOM05D002370 ORTHO05D003878 1.3e-18 97.4 241 36.9
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 1.3e-18 97.4 205 38.5
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 1.7e-18 97.1 241 36.5
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.7e-18 97.1 208 38.5
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 1.7e-18 97.1 239 36.8
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 2.2e-18 96.7 243 35.8
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 2.9e-18 96.3 239 36.4
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.9e-18 96.3 206 38.3
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 2.9e-18 96.3 206 38.3
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 2.9e-18 96.3 194 39.7
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 3.7e-18 95.9 239 36.8
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 3.7e-18 95.9 240 35.8
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 3.7e-18 95.9 240 36.7
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 3.7e-18 95.9 238 36.6
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 4.9e-18 95.5 222 37.8
CDE06G2553 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 4.9e-18 95.5 213 37.6
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 6.4e-18 95.1 240 35.8
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 6.4e-18 95.1 268 34.7
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 6.4e-18 95.1 268 34.7
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 6.4e-18 95.1 268 34.7
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 6.4e-18 95.1 268 34.7
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 6.4e-18 95.1 239 36.0
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 6.4e-18 95.1 239 36.0
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 6.4e-18 95.1 205 38.0
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 8.3e-18 94.7 239 36.4
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 1.1e-17 94.4 232 37.1
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.1e-17 94.4 201 37.8
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.1e-17 94.4 242 36.0
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.4e-17 94.0 206 38.8
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 1.9e-17 93.6 268 34.3
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 1.9e-17 93.6 239 36.0
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 1.9e-17 93.6 209 37.3
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 2.4e-17 93.2 240 36.2
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 2.4e-17 93.2 203 37.9
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 2.4e-17 93.2 203 37.9
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 3.2e-17 92.8 294 33.0
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 3.2e-17 92.8 288 33.0
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 4.1e-17 92.4 239 35.1
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 4.1e-17 92.4 206 37.4
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 5.4e-17 92.0 238 35.7
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 5.4e-17 92.0 206 36.9
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 5.4e-17 92.0 206 36.9
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 5.4e-17 92.0 240 35.4
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 7.1e-17 91.7 291 33.0
Actinidia00351 Actinidia chinensis HOM05D002370 ORTHO05D003878 9.2e-17 91.3 240 35.4
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 9.2e-17 91.3 239 35.1
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 9.2e-17 91.3 239 35.1
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 1.2e-16 90.9 239 35.1
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 1.2e-16 90.9 240 36.7
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 1.2e-16 90.9 239 34.7
Solyc05g021580.3 Solanum lycopersicum HOM05D017937 ORTHO05D023148 1.2e-16 90.9 51 92.2
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 2.1e-16 90.1 209 37.3
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 3.5e-16 89.4 210 36.2
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 3.5e-16 89.4 239 36.4
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 4.6e-16 89.0 239 35.1
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.3e-15 87.4 294 32.0
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 1.5e-14 84.0 210 34.8
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.9e-14 83.6 209 35.4
vmacro01938 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 4.3e-14 82.4 236 33.1
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 7.3e-14 81.6 200 35.5
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 9.5e-14 81.3 209 34.4
SEGI_17280 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 9.5e-14 81.3 209 34.4
Solyc03g051670.1 Solanum lycopersicum HOM05D017937 ORTHO05D023148 8.1e-13 78.2 45 91.1
QL11p029030 Quercus lobata HOM05D002370 ORTHO05D003878 2.4e-12 76.6 79 62.0
EL10Ac5g12235 Beta vulgaris HOM05D002370 ORTHO05D003878 8.9e-12 74.7 80 60.0
Sopen11g012170 Solanum pennellii HOM05D017937 ORTHO05D023148 2.6e-11 73.2 47 83.0
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 3.4e-11 72.8 213 31.5
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 9.9e-11 71.2 77 55.8
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 1.7e-10 70.5 80 58.8
SalBow6G7047 Salvia bowleyana HOM05D002370 ORTHO05D003878 8.4e-10 68.2 90 52.2
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 3.5e-08 62.8 111 44.1
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 4.6e-08 62.4 147 33.3
Eucgr.C04378 Eucalyptus grandis HOM05D002370 ORTHO05D003878 3.9e-07 59.3 80 48.8
PGSC0003DMG400001056 Solanum tuberosum HOM05D002370 ORTHO05D026326 5.1e-07 58.9 36 80.6
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 8.7e-07 58.2 82 47.6
Hma1.2p1_1758F.1_g301200 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.9e-06 57.0 48 62.5
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 2.5e-06 56.6 82 50.0


User provided reference genes

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