Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 1.3e-146 523.1 283 100.0
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 1.1e-140 503.4 283 96.8
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 3.7e-128 461.8 300 87.0
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 6.5e-101 371.3 291 77.3
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 1.3e-80 303.9 262 69.1
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 1.4e-79 300.4 296 64.9
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 2.4e-79 299.7 297 63.6
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 5.4e-79 298.5 297 64.6
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 2.8e-75 286.2 299 63.9
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 2.0e-73 280.0 239 69.9
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 1.9e-63 246.9 175 72.6
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 2.1e-62 243.4 162 74.1
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 5.6e-60 235.3 165 72.7
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 1.1e-58 231.1 292 54.1
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 1.1e-58 231.1 249 55.0
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 2.4e-58 229.9 215 58.6
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 6.8e-58 228.4 311 48.9
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 1.5e-57 227.3 312 48.1
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 3.8e-56 222.6 151 73.5
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 6.4e-56 221.9 215 55.3
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 8.4e-56 221.5 145 75.9
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 1.1e-55 221.1 352 45.2
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 1.9e-55 220.3 178 65.7
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 2.4e-55 219.9 280 49.3
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 2.4e-55 219.9 160 71.2
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 5.4e-55 218.8 287 47.0
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 7.1e-55 218.4 193 62.7
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 7.1e-55 218.4 144 75.7
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 1.6e-54 217.2 330 44.2
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.6e-54 217.2 208 60.1
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 2.1e-54 216.9 177 62.7
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 3.5e-54 216.1 132 80.3
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 3.5e-54 216.1 258 51.2
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 4.6e-54 215.7 216 55.1
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 4.6e-54 215.7 297 48.1
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 6.0e-54 215.3 291 47.1
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 1.3e-53 214.2 177 61.6
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 1.3e-53 214.2 285 49.1
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 1.7e-53 213.8 295 47.5
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 2.3e-53 213.4 297 47.5
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 3.0e-53 213.0 186 58.6
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 3.9e-53 212.6 226 52.7
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 3.9e-53 212.6 146 74.7
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 3.9e-53 212.6 146 74.0
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 8.7e-53 211.5 177 60.5
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 8.7e-53 211.5 218 54.6
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 1.5e-52 210.7 182 62.1
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 1.9e-52 210.3 177 59.9
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 1.9e-52 210.3 277 47.3
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 1.9e-52 210.3 159 70.4
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 4.3e-52 209.1 289 47.1
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 5.6e-52 208.8 149 68.5
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 7.3e-52 208.4 285 50.2
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 9.6e-52 208.0 251 51.0
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 1.6e-51 207.2 134 76.1
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 2.8e-51 206.5 244 53.3
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 3.6e-51 206.1 215 53.0
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 3.6e-51 206.1 274 47.8
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 3.6e-51 206.1 278 47.5
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 3.6e-51 206.1 278 47.5
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 8.1e-51 204.9 281 48.8
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 8.1e-51 204.9 140 72.1
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 1.8e-50 203.8 261 47.9
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 3.1e-50 203.0 322 43.5
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 4.0e-50 202.6 150 67.3
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 4.0e-50 202.6 150 67.3
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 4.0e-50 202.6 150 67.3
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 4.0e-50 202.6 150 67.3
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 5.2e-50 202.2 151 66.9
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 6.9e-50 201.8 244 52.5
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 1.2e-49 201.1 232 49.6
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.6e-49 199.9 142 70.4
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 3.4e-49 199.5 156 63.5
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 1.3e-48 197.6 257 48.2
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 1.3e-48 197.6 290 46.6
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 2.2e-48 196.8 286 46.9
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 6.4e-48 195.3 307 45.3
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 8.4e-48 194.9 134 69.4
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 1.1e-47 194.5 281 45.9
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 1.1e-47 194.5 288 44.4
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.1e-47 194.5 288 44.4
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 1.4e-47 194.1 347 41.2
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 5.4e-47 192.2 309 44.3
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 5.4e-47 192.2 159 60.4
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 7.1e-47 191.8 267 44.6
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 1.6e-46 190.7 184 58.2
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 1.6e-46 190.7 184 58.2
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.7e-46 189.9 159 60.4
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.7e-46 189.9 159 60.4
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 3.5e-46 189.5 225 49.8
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 4.6e-46 189.1 295 46.8
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.3e-45 187.6 270 44.8
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 2.3e-45 186.8 255 45.5
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 2.3e-45 186.8 261 47.5
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 3.9e-45 186.0 181 56.4
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 3.9e-45 186.0 290 43.8
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 5.1e-45 185.7 198 52.5
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 6.6e-45 185.3 309 41.7
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 8.7e-45 184.9 291 42.6
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 1.5e-44 184.1 288 45.1
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 4.3e-44 182.6 292 44.5
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.3e-43 181.0 302 41.4
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.3e-43 181.0 232 46.1
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 2.1e-43 180.3 266 42.5
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 2.1e-43 180.3 264 46.6
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 2.1e-43 180.3 286 43.7
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 8.1e-43 178.3 286 45.1
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 1.4e-42 177.6 360 38.6
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 2.4e-42 176.8 275 46.2
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 3.1e-42 176.4 282 44.0
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 2.0e-41 173.7 193 50.8
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 3.4e-41 172.9 137 63.5
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 3.4e-41 172.9 232 45.3
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 4.5e-41 172.6 134 63.4
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 2.2e-40 170.2 257 44.4
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 4.9e-40 169.1 347 39.5
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 8.4e-40 168.3 150 57.3
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 1.4e-39 167.5 243 46.5
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.9e-39 167.2 159 56.6
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 2.4e-39 166.8 276 42.8
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 4.2e-39 166.0 159 56.0
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 1.2e-38 164.5 132 63.6
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 2.7e-38 163.3 314 42.0
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 1.3e-37 161.0 136 63.2
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 2.1e-35 153.7 132 62.9
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 5.3e-34 149.1 138 55.1
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 3.8e-32 142.9 102 72.5
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 3.2e-31 139.8 144 56.2
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 1.0e-29 134.8 165 47.9
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 1.8e-29 134.0 132 50.0
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 1.5e-28 131.0 280 35.7
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 5.6e-28 129.0 162 49.4
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 2.1e-27 127.1 215 40.5
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 8.4e-24 115.2 89 62.9
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 1.3e-21 107.8 136 44.9
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 3.9e-21 106.3 117 48.7
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 2.4e-18 97.1 133 39.8
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 7.7e-17 92.0 100 56.0
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 3.8e-16 89.7 84 53.6
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 5.5e-15 85.9 217 34.1
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 5.7e-12 75.9 137 35.8
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 2.2e-11 73.9 161 30.4
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 3.7e-11 73.2 196 37.2
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 2.6e-09 67.0 57 57.9
PRCOL_00005361 Prasinoderma coloniale HOM05D005159 ORTHO05D006237 9.4e-07 58.5 141 29.8


User provided reference genes

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