Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g046310.1 Solanum lycopersicum HOM05D000337 ORTHO05D392688 6.1e-31 136.7 64 100.0
Peaxi162Scf00479g00435 Petunia axillaris HOM05D000337 ORTHO05D000297 1.3e-12 75.9 57 63.2
Nitab4.5_0000612g0130 Nicotiana tabacum HOM05D000337 ORTHO05D000297 1.4e-11 72.4 58 55.2
Nitab4.5_0003161g0050 Nicotiana tabacum HOM05D000337 ORTHO05D000297 1.6e-10 68.9 58 51.7
Nitab4.5_0003640g0010 Nicotiana tabacum HOM05D000337 ORTHO05D000297 2.0e-10 68.6 47 66.0
Migut.H00546 Erythranthe guttata HOM05D000337 ORTHO05D000297 1.0e-09 66.2 57 49.1
HanXRQChr09g0263411 Helianthus annuus HOM05D000337 ORTHO05D000297 1.0e-09 66.2 58 53.4
HanXRQChr10g0283741 Helianthus annuus HOM05D000337 ORTHO05D000297 1.3e-09 65.9 58 50.0
Lsat_1_v5_gn_4_175780 Lactuca sativa HOM05D000337 ORTHO05D000297 1.7e-09 65.5 58 51.7
CAN.G76.6 Capsicum annuum HOM05D000337 ORTHO05D000297 3.0e-09 64.7 58 50.0
Oeu032866.1 Olea europaea HOM05D000337 ORTHO05D000297 3.0e-09 64.7 57 49.1
Actinidia17621 Actinidia chinensis HOM05D000337 ORTHO05D000297 5.0e-09 63.9 57 49.1
DCAR_010980 Daucus carota HOM05D000337 ORTHO05D000297 5.0e-09 63.9 49 55.1
Nitab4.5_0001324g0060 Nicotiana tabacum HOM05D000337 ORTHO05D000297 5.0e-09 63.9 58 51.7
Psat1g062720 Pisum sativum HOM05D000337 ORTHO05D000297 5.0e-09 63.9 58 50.0
Solyc02g065600.3 Solanum lycopersicum HOM05D000337 ORTHO05D000297 5.0e-09 63.9 58 50.0
CAN.G93.37 Capsicum annuum HOM05D000337 ORTHO05D000297 6.6e-09 63.5 58 50.0
ECA232G0097 Erigeron canadensis HOM05D000337 ORTHO05D000297 6.6e-09 63.5 58 51.7
HanXRQChr15g0490221 Helianthus annuus HOM05D000337 ORTHO05D000297 6.6e-09 63.5 58 50.0
PGSC0003DMG400026554 Solanum tuberosum HOM05D000337 ORTHO05D000297 6.6e-09 63.5 58 50.0
Dinv34862 Davidia involucrata HOM05D000337 ORTHO05D000297 8.6e-09 63.2 58 50.0
Oeu049015.1 Olea europaea HOM05D000337 ORTHO05D000297 1.1e-08 62.8 57 50.9
TPR.G9665 Trifolium pratense HOM05D000337 ORTHO05D000297 1.5e-08 62.4 58 48.3
Atru.chr8.773 Acer truncatum HOM05D000337 ORTHO05D000297 1.9e-08 62.0 58 48.3
CAN.G497.15 Capsicum annuum HOM05D000337 ORTHO05D000297 1.9e-08 62.0 58 51.7
Ciclev10011721m.g Citrus clementina HOM05D000337 ORTHO05D000297 1.9e-08 62.0 58 48.3
Medtr6g016880 Medicago truncatula HOM05D000337 ORTHO05D000297 1.9e-08 62.0 58 48.3
PGSC0003DMG400010097 Solanum tuberosum HOM05D000337 ORTHO05D000297 1.9e-08 62.0 58 51.7
Solyc03g046270.4 Solanum lycopersicum HOM05D000337 ORTHO05D000297 2.5e-08 61.6 49 55.1
Sopen03g009740 Solanum pennellii HOM05D000337 ORTHO05D000297 2.5e-08 61.6 49 55.1
PGR004G1610 Punica granatum HOM05D000337 ORTHO05D000297 3.3e-08 61.2 57 49.1
Sopen02g034410 Solanum pennellii HOM05D000337 ORTHO05D000297 3.3e-08 61.2 58 50.0
Dinv33910 Davidia involucrata HOM05D000337 ORTHO05D000297 4.3e-08 60.8 57 45.6
Hma1.2p1_1581F.1_g291950 Hydrangea macrophylla HOM05D000337 ORTHO05D000297 4.3e-08 60.8 58 46.6
Lj7A8T43 Lonicera japonica HOM05D000337 ORTHO05D000297 4.3e-08 60.8 58 48.3
Potri.004G105700 Populus trichocarpa HOM05D000337 ORTHO05D000297 4.3e-08 60.8 57 49.1
PGSC0003DMG400018771 Solanum tuberosum HOM05D000337 ORTHO05D000297 4.3e-08 60.8 49 55.1
CiPaw.04G004200 Carya illinoinensis HOM05D000337 ORTHO05D000297 5.6e-08 60.5 57 43.9
PSO478G2021 Papaver somniferum HOM05D000337 ORTHO05D000297 5.6e-08 60.5 58 44.8
Peaxi162Scf00019g00119 Petunia axillaris HOM05D000337 ORTHO05D000297 5.6e-08 60.5 58 48.3
Solyc02g089680.4 Solanum lycopersicum HOM05D000337 ORTHO05D000297 5.6e-08 60.5 58 50.0
Solyc02g089690.3 Solanum lycopersicum HOM05D000337 ORTHO05D000297 5.6e-08 60.5 58 50.0
Sopen02g034400 Solanum pennellii HOM05D000337 ORTHO05D000297 5.6e-08 60.5 58 50.0
PGSC0003DMG400010096 Solanum tuberosum HOM05D000337 ORTHO05D000297 5.6e-08 60.5 58 50.0
Nitab4.5_0001739g0010 Nicotiana tabacum HOM05D000337 ORTHO05D000297 7.3e-08 60.1 58 50.0
QL02p053494 Quercus lobata HOM05D000337 ORTHO05D000297 7.3e-08 60.1 58 46.6
Glyma.19G041600 Glycine max HOM05D000337 ORTHO05D000297 9.5e-08 59.7 57 42.1
Nn4g23638 Nelumbo nucifera HOM05D000337 ORTHO05D000297 9.5e-08 59.7 56 46.4
Nitab4.5_0008317g0020 Nicotiana tabacum HOM05D000337 ORTHO05D000297 9.5e-08 59.7 57 52.6
Peaxi162Scf01056g00119 Petunia axillaris HOM05D000337 ORTHO05D000297 9.5e-08 59.7 57 50.9
Lj4C129G12 Lonicera japonica HOM05D000337 ORTHO05D000297 1.2e-07 59.3 58 48.3
arahy.Tifrunner.gnm1.ann1.3U8Q93 Arachis hypogaea HOM05D000337 ORTHO05D000297 1.6e-07 58.9 56 44.6
arahy.Tifrunner.gnm1.ann1.T9W1WX Arachis hypogaea HOM05D000337 ORTHO05D000297 1.6e-07 58.9 55 45.5
CiPaw.03G006600 Carya illinoinensis HOM05D000337 ORTHO05D000297 1.6e-07 58.9 58 43.1
Nitab4.5_0001982g0090 Nicotiana tabacum HOM05D000337 ORTHO05D000297 1.6e-07 58.9 57 50.9
Duzib133G0662 Durio zibethinus HOM05D000337 ORTHO05D000297 2.1e-07 58.5 58 44.8
CAN.G497.14 Capsicum annuum HOM05D000337 ORTHO05D000297 2.8e-07 58.2 58 48.3
Migut.K00865 Erythranthe guttata HOM05D000337 ORTHO05D000297 2.8e-07 58.2 57 43.9
CANSAT64G3023 Cannabis sativa HOM05D000337 ORTHO05D000297 3.6e-07 57.8 57 47.4
Glyma.13G049200 Glycine max HOM05D000337 ORTHO05D000297 3.6e-07 57.8 56 41.1
MSTRG.23835 Avicennia marina HOM05D000337 ORTHO05D000297 4.7e-07 57.4 57 45.6
Lsat_1_v5_gn_3_94360 Lactuca sativa HOM05D000337 ORTHO05D000297 4.7e-07 57.4 56 48.2
vmacro18099 Vaccinium macrocarpon HOM05D000337 ORTHO05D000297 4.7e-07 57.4 57 47.4
MSTRG.2947 Avicennia marina HOM05D000337 ORTHO05D000297 6.2e-07 57.0 56 46.4
PSO210G3668 Papaver somniferum HOM05D000337 ORTHO05D000297 6.2e-07 57.0 56 42.9
TWI77G0229 Tripterygium wilfordii HOM05D000337 ORTHO05D000297 6.2e-07 57.0 56 42.9
ECA246G0402 Erigeron canadensis HOM05D000337 ORTHO05D000297 8.1e-07 56.6 57 42.1
Sabra04G0076500 Salix brachista HOM05D000337 ORTHO05D000297 8.1e-07 56.6 57 45.6
SGA_v2.0_scaffold469G52053 Striga asiatica HOM05D000337 ORTHO05D000297 8.1e-07 56.6 57 45.6
SGA_v2.0_scaffold10G05139 Striga asiatica HOM05D000337 ORTHO05D000297 1.1e-06 56.2 57 42.1
GSVIVG01036470001 Vitis vinifera HOM05D000337 ORTHO05D000297 1.1e-06 56.2 57 42.1
Duzib133G1366 Durio zibethinus HOM05D000337 ORTHO05D000297 1.8e-06 55.5 58 43.1
Migut.H00541 Erythranthe guttata HOM05D000337 ORTHO05D000297 2.3e-06 55.1 57 43.9
Glyma.13G049100 Glycine max HOM05D000337 ORTHO05D000297 2.3e-06 55.1 58 41.4
VMungo0464G1071 Vigna mungo HOM05D000337 ORTHO05D000297 2.3e-06 55.1 58 43.1
CANSAT64G2246 Cannabis sativa HOM05D000337 ORTHO05D000297 3.1e-06 54.7 57 45.6
Duzib138G0446 Durio zibethinus HOM05D000337 ORTHO05D000297 3.1e-06 54.7 58 43.1
FAN05G2533 Fragaria x ananassa HOM05D000337 ORTHO05D000297 3.1e-06 54.7 57 40.4
PSO210G6577 Papaver somniferum HOM05D000337 ORTHO05D000297 3.1e-06 54.7 56 41.1
Thecc.04G144600 Theobroma cacao HOM05D000337 ORTHO05D000297 3.1e-06 54.7 58 41.4
VMungo0464G0520 Vigna mungo HOM05D000337 ORTHO05D000297 3.1e-06 54.7 58 41.4
MBI14_g38622_MAGBIO Magnolia biondii HOM05D000337 ORTHO05D000297 4.0e-06 54.3 56 42.9
Phvul.004G048800 Phaseolus vulgaris HOM05D000337 ORTHO05D000297 4.0e-06 54.3 58 41.4
Rhsim08G0080300 Rhododendron simsii HOM05D000337 ORTHO05D000297 4.0e-06 54.3 58 43.1
Glyma.19G041375 Glycine max HOM05D000337 ORTHO05D000297 5.2e-06 53.9 58 41.4
Sopen02g015790 Solanum pennellii HOM05D000337 ORTHO05D000297 5.2e-06 53.9 41 53.7
FAN02G3173 Fragaria x ananassa HOM05D000337 ORTHO05D000297 6.8e-06 53.5 57 38.6
FAN09G3778 Fragaria x ananassa HOM05D000337 ORTHO05D000297 6.8e-06 53.5 57 38.6
PGR042G2398 Punica granatum HOM05D000337 ORTHO05D000297 6.8e-06 53.5 57 43.9
Gorai.007G186900 Gossypium raimondii HOM05D000337 ORTHO05D000297 8.9e-06 53.1 58 41.4
Phvul.004G048900 Phaseolus vulgaris HOM05D000337 ORTHO05D000297 8.9e-06 53.1 58 41.4
RcHm_v2.0_Chr2g0163781 Rosa chinensis HOM05D000337 ORTHO05D000297 8.9e-06 53.1 57 38.6


User provided reference genes

Program Settings