Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 0.0e+00 2562.3 1291 100.0
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 0.0e+00 2463.3 1291 96.6
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 0.0e+00 2230.3 1283 89.3
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 0.0e+00 2074.3 1319 81.0
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 2014.6 1322 78.2
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 2008.0 1323 78.0
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 0.0e+00 1925.2 1330 76.1
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1192.9 1343 49.5
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1182.2 1351 49.6
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1174.1 1344 49.3
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1144.0 1343 47.6
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1137.9 1327 48.2
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 0.0e+00 1127.1 1237 50.4
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 0.0e+00 1121.7 1217 50.6
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1113.2 1329 47.3
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1082.8 1325 46.8
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1079.3 1458 42.6
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1078.5 1322 46.1
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 7.9e-311 1070.8 1325 46.7
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 4.3e-309 1065.1 1348 45.5
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 1.8e-307 1059.7 1246 47.2
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 4.1e-307 1058.5 1343 45.3
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 6.1e-303 1044.6 1317 45.6
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 1.3e-302 1043.5 1334 45.6
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.5e-301 1040.0 1276 46.6
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 1.9e-301 1039.6 1311 45.2
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 4.8e-300 1035.0 1336 44.4
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.3e-297 1026.9 1232 47.3
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 1.4e-296 1023.5 1359 44.3
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 2.5e-296 1022.7 1340 45.1
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 4.2e-296 1021.9 1341 44.4
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 6.7e-294 1014.6 1331 44.3
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 6.3e-292 1008.1 1350 43.6
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 1.8e-291 1006.5 1343 43.6
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 2.2e-289 999.6 1328 42.8
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 1.4e-288 996.9 1356 42.9
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 2.5e-288 996.1 1362 43.0
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 3.9e-286 988.8 1346 42.3
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 2.6e-285 986.1 1268 45.3
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 6.3e-284 981.5 1317 42.7
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 6.3e-284 981.5 1324 44.0
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 5.3e-283 978.4 1330 43.1
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 6.5e-281 971.5 1274 44.7
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 1.1e-280 970.7 1342 43.7
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.9e-280 969.9 1343 43.3
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 2.5e-280 969.5 1316 42.9
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 5.5e-280 968.4 1324 43.6
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.1e-277 960.7 1325 43.0
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 9.7e-277 957.6 1203 46.9
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 2.2e-276 956.4 1325 43.5
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 3.1e-275 952.6 1324 43.2
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 2.3e-270 936.4 1329 42.4
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 2.9e-265 919.5 1311 43.2
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 1.8e-262 910.2 1338 41.5
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 1.0e-257 894.4 1303 43.1
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 8.9e-254 881.3 1189 43.9
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 9.8e-253 877.9 1347 39.5
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.9e-248 863.6 1235 43.2
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 2.5e-248 863.2 1309 41.4
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.4e-246 857.4 1327 39.9
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 4.0e-246 855.9 1303 41.1
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 5.8e-245 852.0 1316 40.8
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 4.9e-244 849.0 1307 41.3
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 1.2e-242 844.3 1307 40.8
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 1.6e-242 844.0 1328 40.7
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 9.5e-240 834.7 1296 39.9
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 9.5e-240 834.7 1304 40.7
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 6.8e-238 828.6 1314 39.9
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 7.1e-235 818.5 1267 40.3
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 9.5e-232 808.1 1304 39.8
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 1.4e-227 794.3 1277 40.0
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 2.4e-227 793.5 1282 38.3
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 3.9e-225 786.2 1290 39.5
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 3.3e-224 783.1 1326 37.9
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 4.6e-218 762.7 1313 38.7
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 1.1e-214 751.5 1277 38.2
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 3.4e-213 746.5 1310 37.8
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 9.9e-205 718.4 1320 36.4
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 7.9e-202 708.8 1321 34.9
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.8e-201 707.6 1289 36.3
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 1.5e-192 677.9 1107 38.5
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 3.2e-187 660.2 1039 40.4
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 4.2e-187 659.8 1041 40.0
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 6.7e-185 652.5 1095 37.4
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 6.3e-183 646.0 1182 36.1
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.8e-174 617.8 1217 35.3
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 2.2e-172 610.9 1279 33.8
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 6.5e-172 609.4 1092 35.3
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 6.5e-172 609.4 709 48.5
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 7.9e-170 602.4 681 50.2
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.1e-168 598.6 1236 33.8
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 2.2e-164 584.3 645 48.2
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 1.1e-163 582.0 1220 33.5
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 2.5e-163 580.9 692 49.1
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 3.0e-153 547.4 717 43.9
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 4.6e-133 480.3 574 45.8
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 4.7e-122 443.7 705 40.1
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.6e-120 438.0 784 34.2
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 3.0e-116 424.5 602 41.4
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 7.6e-112 409.8 895 34.9
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.8e-111 407.5 756 37.2
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 3.8e-111 407.5 802 35.5
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 1.4e-110 405.6 661 40.5
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 4.3e-107 394.0 717 37.7
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 9.9e-104 382.9 640 38.6
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.4e-89 335.9 815 30.1
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 6.4e-87 327.0 319 53.0
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.3e-84 319.3 813 28.8
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.6e-72 278.5 517 33.3
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.4e-65 256.1 907 28.4
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 2.4e-57 228.8 933 25.2
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.0e-40 172.6 296 37.5
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 9.4e-38 163.7 262 39.3
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 8.8e-36 157.1 534 29.6
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 7.5e-35 154.1 264 35.6
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 1.4e-33 149.8 523 30.2
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 6.1e-29 134.4 110 59.1
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 1.7e-23 116.3 286 29.4
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 1.9e-22 112.8 471 28.7
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 3.3e-22 112.1 543 27.1
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 2.8e-21 109.0 373 24.7
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 4.7e-21 108.2 366 24.9
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 1.4e-20 106.7 528 28.4
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 2.3e-20 105.9 511 27.8
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 2.3e-20 105.9 511 27.8
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 3.1e-20 105.5 528 28.2
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 5.2e-20 104.8 527 28.8
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 7.5e-19 100.9 145 35.2
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 1.1e-17 97.1 541 26.2
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 7.0e-17 94.4 334 25.1
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 2.8e-13 82.4 428 25.2
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 5.2e-12 78.2 171 31.6
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 1.2e-11 77.0 461 24.5
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 9.8e-11 73.9 139 30.9
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.3e-10 73.6 269 32.7
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.3e-10 73.6 269 32.7
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 2.1e-08 66.2 517 21.9


User provided reference genes

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