Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 3.9e-58 228.0 123 100.0
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 1.8e-47 192.6 146 76.0
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 1.8e-47 192.6 146 76.0
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 2.4e-47 192.2 146 77.4
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 3.2e-44 181.8 150 72.0
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 3.9e-42 174.9 143 71.3
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 2.4e-36 155.6 147 63.3
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 9.3e-36 153.7 133 62.4
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 9.3e-36 153.7 111 80.2
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 4.6e-35 151.4 131 64.9
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 1.3e-34 149.8 135 62.2
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 5.1e-34 147.9 135 63.0
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 5.1e-34 147.9 126 65.9
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 1.1e-33 146.7 146 58.9
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 1.1e-33 146.7 141 60.3
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 2.5e-33 145.6 129 63.6
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 2.5e-33 145.6 143 59.4
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 5.6e-33 144.4 135 59.3
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 7.4e-33 144.1 134 58.2
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.3e-32 143.3 139 58.3
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.3e-32 143.3 139 58.3
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 2.1e-32 142.5 142 55.6
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 2.1e-32 142.5 145 56.6
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 2.1e-32 142.5 144 58.3
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 2.8e-32 142.1 137 58.4
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 6.2e-32 141.0 129 64.3
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 8.2e-32 140.6 132 58.3
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 8.2e-32 140.6 153 52.3
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.1e-31 140.2 142 57.0
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.1e-31 140.2 142 57.0
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 1.1e-31 140.2 136 61.0
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 1.4e-31 139.8 147 56.5
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.8e-31 139.4 142 55.6
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 3.1e-31 138.7 151 52.3
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 4.0e-31 138.3 135 58.5
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 6.9e-31 137.5 135 57.8
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 9.0e-31 137.1 136 56.6
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 9.0e-31 137.1 142 54.2
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.2e-30 136.7 125 61.6
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 1.2e-30 136.7 131 58.8
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 1.2e-30 136.7 137 59.9
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 1.2e-30 136.7 144 54.9
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 1.5e-30 136.3 132 56.1
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 1.5e-30 136.3 128 60.2
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 2.6e-30 135.6 143 56.6
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 2.6e-30 135.6 128 59.4
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 3.4e-30 135.2 141 55.3
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.4e-30 135.2 125 60.8
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 3.4e-30 135.2 125 60.8
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 3.4e-30 135.2 123 59.3
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 4.5e-30 134.8 141 55.3
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 5.8e-30 134.4 145 54.5
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 7.6e-30 134.0 139 57.6
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 7.6e-30 134.0 139 56.8
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 1.3e-29 133.3 128 57.0
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 1.7e-29 132.9 155 51.6
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.9e-29 132.1 113 62.8
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 2.9e-29 132.1 139 56.1
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 3.8e-29 131.7 111 63.1
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 4.9e-29 131.3 156 50.0
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 4.9e-29 131.3 144 55.6
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 6.5e-29 131.0 157 51.0
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 6.5e-29 131.0 124 60.5
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 8.4e-29 130.6 111 63.1
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 8.4e-29 130.6 126 54.8
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 1.4e-28 129.8 144 53.5
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 1.4e-28 129.8 122 55.7
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 1.4e-28 129.8 123 59.3
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 1.9e-28 129.4 124 58.9
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 1.9e-28 129.4 132 53.8
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 2.5e-28 129.0 131 58.0
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 3.2e-28 128.6 129 60.5
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 3.2e-28 128.6 127 55.9
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 3.2e-28 128.6 148 51.4
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 3.2e-28 128.6 149 51.0
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 3.2e-28 128.6 132 55.3
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 4.2e-28 128.3 131 58.0
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 4.2e-28 128.3 134 57.5
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 4.2e-28 128.3 131 58.0
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 4.2e-28 128.3 131 58.0
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 4.2e-28 128.3 131 58.0
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 5.5e-28 127.9 138 54.3
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 7.1e-28 127.5 127 59.8
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 9.3e-28 127.1 147 53.7
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 1.6e-27 126.3 146 51.4
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 2.7e-27 125.6 149 49.7
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 4.6e-27 124.8 122 55.7
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 4.6e-27 124.8 124 55.6
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 7.9e-27 124.0 137 54.7
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 1.0e-26 123.6 137 54.7
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 5.1e-26 121.3 132 51.5
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 8.7e-26 120.6 133 53.4
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.1e-25 120.2 144 50.7
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 1.1e-25 120.2 138 52.2
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 3.3e-25 118.6 117 54.7
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 4.3e-25 118.2 114 56.1
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 4.3e-25 118.2 141 53.2
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 5.7e-25 117.9 125 52.8
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 5.7e-25 117.9 125 52.8
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 5.7e-25 117.9 117 53.8
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 5.7e-25 117.9 117 53.8
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 5.7e-25 117.9 117 53.8
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 5.7e-25 117.9 117 53.8
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 9.7e-25 117.1 130 48.5
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 1.6e-24 116.3 130 56.2
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 2.8e-24 115.5 122 53.3
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 2.8e-24 115.5 121 56.2
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 1.1e-23 113.6 125 52.0
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 4.5e-22 108.2 147 44.9
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 7.6e-22 107.5 135 48.1
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 3.2e-20 102.1 128 46.9
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 3.2e-20 102.1 135 46.7
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 9.3e-20 100.5 145 42.8
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 5.1e-18 94.7 121 44.6
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 5.1e-18 94.7 126 50.0
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 3.3e-17 92.0 134 41.0
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 1.3e-16 90.1 121 47.9
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 2.2e-16 89.4 104 51.0
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 6.9e-15 84.3 67 65.7
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 6.9e-15 84.3 104 51.0
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 6.9e-15 84.3 141 39.7
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 4.5e-14 81.6 121 44.6
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 6.5e-13 77.8 110 47.3
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 4.7e-11 71.6 62 61.3
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 4.7e-11 71.6 65 58.5
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 3.7e-08 62.0 116 37.1
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 3.7e-08 62.0 53 54.7
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 4.1e-07 58.5 49 55.1
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 4.5e-06 55.1 56 50.0


User provided reference genes

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