Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 4.4e-178 627.9 323 100.0
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 1.2e-172 609.8 323 97.8
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 5.3e-147 524.6 274 96.7
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.5e-138 495.0 317 82.0
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 7.6e-138 494.2 319 81.5
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 3.8e-137 491.9 317 81.7
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 4.6e-135 485.0 313 80.2
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 8.8e-102 374.4 310 62.3
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 3.3e-101 372.5 279 65.6
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 6.3e-100 368.2 301 62.5
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 2.4e-99 366.3 303 59.4
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.6e-98 363.6 264 68.9
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 7.7e-98 361.3 269 65.4
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 7.7e-98 361.3 297 61.3
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 2.2e-97 359.8 300 62.7
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 3.8e-97 359.0 280 64.3
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 6.5e-97 358.2 269 64.7
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 8.5e-97 357.8 273 61.9
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 1.9e-96 356.7 313 58.8
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.2e-95 354.0 298 61.4
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 1.6e-95 353.6 273 64.8
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.6e-95 353.6 317 57.1
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.6e-95 353.6 279 63.1
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 4.7e-95 352.1 313 57.5
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 8.0e-95 351.3 266 63.9
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.4e-94 350.5 313 57.8
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.3e-94 349.7 305 60.7
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.0e-94 349.0 300 60.7
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 5.2e-94 348.6 299 58.5
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-93 347.4 290 63.1
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.2e-93 347.4 290 63.1
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.5e-93 347.1 319 56.7
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 2.6e-93 346.3 300 59.3
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.6e-93 346.3 302 59.9
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 3.4e-93 345.9 318 56.9
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 2.2e-92 343.2 276 59.4
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.2e-92 343.2 296 59.5
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 6.3e-92 341.7 281 59.1
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 1.1e-91 340.9 276 60.5
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.1e-91 340.9 266 61.7
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 4.1e-91 339.0 284 59.9
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.6e-90 337.0 315 56.5
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 2.7e-90 336.3 273 60.1
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 4.5e-90 335.5 270 61.1
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 4.5e-90 335.5 310 58.1
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.0e-89 334.3 320 53.1
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.3e-89 334.0 267 62.5
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 2.3e-89 333.2 316 54.7
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.3e-89 333.2 291 57.7
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.6e-87 327.0 315 57.1
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.6e-87 327.0 324 53.7
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.8e-87 326.2 265 59.2
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 2.8e-87 326.2 282 57.4
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 2.8e-87 326.2 309 55.0
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 8.0e-87 324.7 309 55.0
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.4e-86 323.9 294 54.4
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.4e-86 323.9 267 59.2
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 3.0e-86 322.8 311 54.0
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.2e-85 320.9 274 56.9
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.0e-85 320.1 309 53.4
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.4e-85 319.3 295 55.6
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 7.5e-85 318.2 266 56.0
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 7.5e-85 318.2 309 55.7
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.3e-84 317.4 274 56.6
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.7e-84 317.0 274 56.6
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 3.7e-84 315.8 306 54.6
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 4.9e-84 315.5 266 55.6
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 6.3e-84 315.1 281 54.1
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 6.3e-84 315.1 310 53.2
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.8e-83 313.5 292 53.8
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.4e-83 313.2 280 54.3
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 2.0e-82 310.1 314 52.2
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.0e-82 310.1 269 53.9
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.7e-82 309.7 303 52.8
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.7e-82 309.7 266 55.3
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 3.5e-82 309.3 327 49.8
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 7.8e-82 308.1 278 52.9
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.8e-81 305.8 295 50.5
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 9.5e-80 301.2 294 54.1
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.6e-79 300.4 291 51.9
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 2.8e-79 299.7 314 50.6
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.4e-78 297.4 276 52.5
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 3.4e-77 292.7 302 48.7
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.3e-76 290.8 301 48.5
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.7e-76 290.4 324 46.9
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 2.2e-76 290.0 314 46.8
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 2.9e-76 289.7 320 46.6
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.4e-76 288.5 321 46.1
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.4e-75 287.3 266 52.3
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.4e-75 286.6 306 47.4
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 4.1e-75 285.8 315 47.0
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 5.4e-75 285.4 253 60.9
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.5e-74 282.7 310 47.1
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 3.0e-73 279.6 314 49.7
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 3.9e-73 279.3 324 45.1
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.6e-73 278.5 309 46.6
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.5e-72 277.3 310 47.1
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.5e-72 277.3 306 49.3
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.9e-72 276.9 289 51.6
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.5e-72 276.6 307 48.5
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 2.8e-71 273.1 321 45.5
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.8e-71 273.1 318 45.3
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 3.6e-71 272.7 318 45.3
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 4.7e-71 272.3 348 42.0
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 4.7e-71 272.3 268 47.8
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.4e-70 270.8 269 48.7
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 7.5e-69 265.0 318 44.3
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.2e-68 263.5 327 46.2
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 2.4e-67 260.0 298 43.6
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.4e-67 258.8 203 65.5
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.4e-67 258.8 203 65.5
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 9.2e-67 258.1 199 64.8
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 9.2e-67 258.1 278 45.7
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 8.6e-65 251.5 201 59.7
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.1e-64 251.1 285 46.7
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.5e-64 250.0 267 47.6
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 5.6e-64 248.8 271 45.8
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 8.1e-63 245.0 268 47.8
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 7.5e-61 238.4 268 47.8
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.2e-58 231.1 290 41.4
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 4.6e-58 229.2 277 46.6
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.6e-58 229.2 263 45.6
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.6e-56 222.2 235 47.7
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 7.3e-56 221.9 292 42.5
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 5.2e-54 215.7 319 38.9
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 7.6e-53 211.8 218 53.7
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 9.9e-53 211.5 299 40.8
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 6.4e-52 208.8 320 38.1
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.1e-47 193.7 171 55.0
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.1e-46 191.4 178 52.8
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.4e-46 190.3 261 41.4
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.2e-45 188.0 270 36.3
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.7e-44 184.1 259 35.9
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.9e-44 183.3 259 37.8
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.9e-44 183.3 298 36.2
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.2e-43 179.9 278 37.1
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 2.4e-30 137.1 98 67.3
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 6.0e-26 122.5 206 34.5
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.3e-17 94.0 86 58.1
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.3e-17 94.0 86 58.1
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 5.1e-17 92.8 205 27.8
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 3.3e-16 90.1 118 34.7
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.6e-15 87.8 131 37.4
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 4.1e-14 83.2 98 42.9
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 5.3e-14 82.8 266 25.6
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 6.9e-14 82.4 95 38.9
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 2.2e-12 77.4 256 25.4
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 2.5e-11 73.9 237 25.3
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 2.5e-11 73.9 78 47.4


User provided reference genes

Program Settings