Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.4e-122 443.0 222 100.0
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 8.7e-117 423.7 222 96.4
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.5e-111 404.4 227 89.9
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.0e-64 248.4 221 59.7
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.5e-64 248.1 238 58.0
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.9e-63 246.5 244 56.1
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.9e-63 246.5 244 57.0
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 3.2e-63 245.7 221 58.8
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.2e-63 245.4 221 58.8
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-62 243.4 212 61.3
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.7e-62 242.7 244 56.1
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.6e-62 242.3 181 64.6
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 8.0e-62 241.1 183 65.6
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.3e-61 239.6 179 65.4
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 6.8e-61 238.0 182 63.7
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 8.8e-61 237.7 173 65.3
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.2e-60 237.3 173 65.9
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.2e-60 237.3 237 56.5
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 2.0e-60 236.5 217 58.1
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.3e-59 233.8 233 54.1
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.7e-59 233.4 206 58.7
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.7e-59 233.4 173 67.1
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 2.2e-59 233.0 173 65.9
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.2e-59 233.0 254 52.4
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 6.3e-59 231.5 237 53.2
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.4e-58 230.3 173 63.0
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.1e-58 229.2 215 57.2
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 3.1e-58 229.2 193 59.6
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 3.1e-58 229.2 207 56.5
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 4.1e-58 228.8 198 58.6
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 4.1e-58 228.8 206 58.3
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 7.0e-58 228.0 192 59.4
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 7.0e-58 228.0 211 55.9
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 9.2e-58 227.6 188 60.6
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 9.2e-58 227.6 198 58.1
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 9.2e-58 227.6 198 59.6
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 1.6e-57 226.9 237 53.2
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 2.0e-57 226.5 203 57.1
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.0e-57 226.5 235 54.5
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.5e-57 225.7 181 59.7
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 4.5e-57 225.3 181 60.2
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 5.9e-57 224.9 202 55.4
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 7.7e-57 224.6 201 56.2
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.7e-56 223.4 208 56.7
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 2.3e-56 223.0 230 50.4
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 2.3e-56 223.0 199 56.3
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 2.9e-56 222.6 183 59.6
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 2.9e-56 222.6 202 59.9
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.9e-56 222.6 178 59.6
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 3.8e-56 222.2 173 61.8
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 3.8e-56 222.2 173 61.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.1e-55 220.7 198 56.6
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.5e-55 220.3 180 59.4
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.9e-55 219.9 171 63.7
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.9e-55 219.9 171 63.7
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.9e-55 219.9 171 63.7
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 2.5e-55 219.5 185 59.5
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 4.3e-55 218.8 178 59.6
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 5.6e-55 218.4 176 60.8
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 5.6e-55 218.4 176 60.8
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.6e-55 218.4 211 54.0
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 5.6e-55 218.4 238 52.1
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 7.3e-55 218.0 176 60.8
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 7.3e-55 218.0 227 52.0
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 7.3e-55 218.0 178 57.3
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 9.5e-55 217.6 179 59.8
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 2.1e-54 216.5 176 60.2
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 2.8e-54 216.1 179 58.7
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 4.7e-54 215.3 182 58.8
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 4.7e-54 215.3 173 58.4
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 4.7e-54 215.3 173 58.4
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 4.7e-54 215.3 200 54.5
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 4.7e-54 215.3 179 58.1
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 6.1e-54 214.9 232 50.4
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 6.1e-54 214.9 171 60.8
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.0e-53 214.2 188 57.4
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 2.3e-53 213.0 173 61.3
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.3e-53 213.0 166 65.1
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.0e-53 212.6 173 59.0
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 6.8e-53 211.5 176 60.2
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 6.8e-53 211.5 232 50.0
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.2e-52 210.7 231 50.2
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.2e-52 210.7 179 55.9
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.5e-52 210.3 173 59.0
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 3.4e-52 209.1 176 58.5
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 4.4e-52 208.8 179 55.9
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 5.7e-52 208.4 152 66.4
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 7.5e-52 208.0 189 55.6
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.8e-52 207.6 149 68.5
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 9.8e-52 207.6 183 54.6
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 2.2e-51 206.5 179 54.7
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 2.9e-51 206.1 179 53.6
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.9e-51 206.1 183 53.0
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 3.7e-51 205.7 220 51.8
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.7e-51 205.7 146 67.1
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 3.7e-51 205.7 227 48.9
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 4.9e-51 205.3 231 48.1
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 6.4e-51 204.9 231 49.4
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.4e-50 203.8 179 52.5
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.4e-50 203.0 146 65.8
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.4e-50 203.0 213 51.2
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 5.4e-50 201.8 183 53.0
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 7.0e-50 201.4 145 65.5
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 9.2e-50 201.1 180 55.6
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.2e-49 200.7 144 66.0
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.6e-49 200.3 137 70.1
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.0e-49 199.9 179 53.6
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 2.7e-49 199.5 222 49.1
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 3.5e-49 199.1 173 53.2
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 4.6e-49 198.7 193 52.8
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 7.8e-49 198.0 179 52.5
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 7.8e-49 198.0 178 53.4
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.7e-48 196.8 146 61.6
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.3e-48 196.4 194 52.1
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 5.0e-48 195.3 157 61.1
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 5.6e-47 191.8 156 59.6
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 7.3e-47 191.4 156 59.6
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 3.6e-46 189.1 170 58.2
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.6e-46 189.1 166 56.6
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.3e-45 186.4 158 58.2
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 2.3e-45 186.4 192 50.5
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 6.8e-45 184.9 215 49.3
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 8.3e-43 177.9 166 54.8
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.1e-42 177.6 147 62.6
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 1.4e-42 177.2 120 67.5
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.3e-40 170.6 249 45.8
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 4.3e-39 165.6 192 50.5
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 2.8e-38 162.9 143 54.5
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.6e-38 162.5 216 43.1
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 5.2e-37 158.7 148 53.4
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.0e-36 156.8 184 45.1
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.0e-36 156.8 180 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.6e-36 156.4 142 52.8
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.6e-36 156.4 134 60.4
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 3.4e-36 156.0 143 49.0
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.4e-34 150.6 139 56.1
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 7.3e-31 138.3 197 41.6
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.1e-29 134.4 171 40.9
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.7e-27 127.1 148 47.3
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 3.8e-27 125.9 111 55.0
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 5.4e-26 122.1 122 54.9
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 2.3e-24 116.7 144 44.4
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.7e-19 100.5 161 41.0
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.4e-18 97.4 145 40.0
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.1e-17 93.6 80 56.2
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.9e-16 89.4 139 35.3
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 7.3e-15 85.1 131 34.4
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.1e-14 83.6 165 33.3
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.8e-13 80.5 132 35.6
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.8e-13 80.5 88 47.7
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 3.8e-11 72.8 242 27.3
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.6e-09 67.4 147 30.6
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.7e-09 66.6 80 48.8
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.0e-08 64.7 145 26.2
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 3.0e-08 63.2 83 41.0
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.5e-07 60.1 118 31.4
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 3.6e-06 56.2 107 36.4
MCO15G027 Micromonas commoda HOM05D023681 ORTHO05D024995 3.6e-06 56.2 137 26.3


User provided reference genes

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