Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g033350.3 Solanum lycopersicum HOM05D001112 ORTHO05D000996 2.5e-75 285.4 150 100.0
Sopen03g006130 Solanum pennellii HOM05D001112 ORTHO05D000996 4.3e-51 204.9 116 93.1
PGSC0003DMG400022526 Solanum tuberosum HOM05D001112 ORTHO05D000996 4.2e-46 188.3 116 88.8
CAN.G354.56 Capsicum annuum HOM05D001112 ORTHO05D000996 8.1e-34 147.5 117 66.7
Nitab4.5_0001561g0110 Nicotiana tabacum HOM05D001112 ORTHO05D000996 2.2e-31 139.4 141 56.7
Peaxi162Scf00635g00921 Petunia axillaris HOM05D001112 ORTHO05D000996 1.2e-29 133.7 137 56.9
Nitab4.5_0001685g0080 Nicotiana tabacum HOM05D001112 ORTHO05D000996 1.6e-29 133.3 141 56.7
PGSC0003DMG400003655 Solanum tuberosum HOM05D001112 ORTHO05D000996 4.2e-22 108.6 120 51.7
Nitab4.5_0006899g0030 Nicotiana tabacum HOM05D001112 ORTHO05D000996 7.1e-22 107.8 106 55.7
CAN.G890.40 Capsicum annuum HOM05D001112 ORTHO05D000996 3.5e-21 105.5 116 51.7
Solyc02g083460.3 Solanum lycopersicum HOM05D001112 ORTHO05D000996 1.8e-20 103.2 106 50.9
Sopen02g028250 Solanum pennellii HOM05D001112 ORTHO05D000996 5.1e-20 101.7 106 50.9
Dinv40138 Davidia involucrata HOM05D001112 ORTHO05D000996 3.1e-17 92.4 100 52.0
Peaxi162Scf00328g00218 Petunia axillaris HOM05D001112 ORTHO05D000996 4.5e-16 88.6 93 52.7
Oeu027740.2 Olea europaea HOM05D001112 ORTHO05D000996 7.6e-16 87.8 110 49.1
Manes.02G109500 Manihot esculenta HOM05D001112 ORTHO05D000996 1.0e-15 87.4 108 48.1
Dinv40137 Davidia involucrata HOM05D001112 ORTHO05D000996 1.3e-15 87.0 107 44.9
Hma1.2p1_0315F.1_g122490 Hydrangea macrophylla HOM05D001112 ORTHO05D000996 1.4e-14 83.6 103 44.7
Dinv40135 Davidia involucrata HOM05D001112 ORTHO05D000996 1.9e-14 83.2 118 43.2
vmacro22202 Vaccinium macrocarpon HOM05D001112 ORTHO05D000996 2.5e-14 82.8 95 49.5
Dinv40132 Davidia involucrata HOM05D001112 ORTHO05D000996 5.5e-14 81.6 115 42.6
Duzib264G0734 Durio zibethinus HOM05D001112 ORTHO05D000996 1.2e-13 80.5 116 44.8
Dinv40134 Davidia involucrata HOM05D001112 ORTHO05D000996 2.1e-13 79.7 59 57.6
Dinv40133 Davidia involucrata HOM05D001112 ORTHO05D000996 4.6e-13 78.6 118 41.5
Eucgr.J02485 Eucalyptus grandis HOM05D001112 ORTHO05D000996 4.6e-13 78.6 89 47.2
Migut.N01964 Erythranthe guttata HOM05D001112 ORTHO05D000996 6.1e-13 78.2 106 44.3
Migut.N01954 Erythranthe guttata HOM05D001112 ORTHO05D000996 7.9e-13 77.8 107 41.1
Thecc.01G012700 Theobroma cacao HOM05D001112 ORTHO05D000996 7.9e-13 77.8 106 42.5
Lj4A224T30 Lonicera japonica HOM05D001112 ORTHO05D000996 1.0e-12 77.4 108 44.4
Cpa.g.sc6.305 Carica papaya HOM05D001112 ORTHO05D000996 1.4e-12 77.0 59 59.3
QL06p051437 Quercus lobata HOM05D001112 ORTHO05D000996 1.8e-12 76.6 112 38.4
Actinidia22945 Actinidia chinensis HOM05D001112 ORTHO05D000996 2.3e-12 76.3 109 38.5
CSS0039745 Camellia sinensis var. sinensis HOM05D001112 ORTHO05D000996 2.3e-12 76.3 91 46.2
vmacro22203 Vaccinium macrocarpon HOM05D001112 ORTHO05D000996 2.3e-12 76.3 92 44.6
Migut.O00576 Erythranthe guttata HOM05D001112 ORTHO05D000996 3.0e-12 75.9 70 54.3
QL06p051484 Quercus lobata HOM05D001112 ORTHO05D000996 3.0e-12 75.9 114 40.4
Gohir.A11G172500 Gossypium hirsutum HOM05D001112 ORTHO05D000996 3.9e-12 75.5 110 43.6
QL06p051509 Quercus lobata HOM05D001112 ORTHO05D000996 5.1e-12 75.1 114 40.4
Lj2A482T67 Lonicera japonica HOM05D001112 ORTHO05D000996 6.7e-12 74.7 95 50.5
GSVIVG01006895001 Vitis vinifera HOM05D001112 ORTHO05D000996 6.7e-12 74.7 113 39.8
Migut.O00449 Erythranthe guttata HOM05D001112 ORTHO05D000996 8.8e-12 74.3 93 47.3
CSS0000013 Camellia sinensis var. sinensis HOM05D001112 ORTHO05D000996 1.1e-11 73.9 93 44.1
CSS0049231 Camellia sinensis var. sinensis HOM05D001112 ORTHO05D000996 1.1e-11 73.9 93 44.1
QL06p051422 Quercus lobata HOM05D001112 ORTHO05D000996 1.1e-11 73.9 93 45.2
QL06p051626 Quercus lobata HOM05D001112 ORTHO05D000996 1.1e-11 73.9 124 37.9
Migut.N01996 Erythranthe guttata HOM05D001112 ORTHO05D000996 1.5e-11 73.6 94 46.8
Migut.O00920 Erythranthe guttata HOM05D001112 ORTHO05D000996 1.5e-11 73.6 106 40.6
Gohir.D03G006200 Gossypium hirsutum HOM05D001112 ORTHO05D000996 1.5e-11 73.6 89 48.3
QL06p051593 Quercus lobata HOM05D001112 ORTHO05D000996 1.5e-11 73.6 114 39.5
SGA_v2.0_scaffold81G26079 Striga asiatica HOM05D001112 ORTHO05D000996 1.5e-11 73.6 91 46.2
TWI73G0610 Tripterygium wilfordii HOM05D001112 ORTHO05D000996 1.5e-11 73.6 93 45.2
Actinidia28728 Actinidia chinensis HOM05D001112 ORTHO05D000996 1.9e-11 73.2 112 40.2
Gorai.007G191400 Gossypium raimondii HOM05D001112 ORTHO05D000996 1.9e-11 73.2 106 43.4
Lsat_1_v5_gn_4_144080 Lactuca sativa HOM05D001112 ORTHO05D000996 1.9e-11 73.2 111 42.3
QL06p051456 Quercus lobata HOM05D001112 ORTHO05D000996 1.9e-11 73.2 109 39.4
TWI09G0194 Tripterygium wilfordii HOM05D001112 ORTHO05D000996 1.9e-11 73.2 91 44.0
CiPaw.08G126300 Carya illinoinensis HOM05D001112 ORTHO05D000996 2.5e-11 72.8 115 40.0
Migut.N01959 Erythranthe guttata HOM05D001112 ORTHO05D000996 3.3e-11 72.4 106 40.6
Gorai.003G006500 Gossypium raimondii HOM05D001112 ORTHO05D000996 3.3e-11 72.4 89 47.2
Cfa007060 Carpinus fangiana HOM05D000356 ORTHO05D000265 4.3e-11 72.0 110 43.6
Ciclev10025374m.g Citrus clementina HOM05D001112 ORTHO05D000996 4.3e-11 72.0 92 48.9
COL.COLO4_22484 Corchorus olitorius HOM05D001112 ORTHO05D000996 4.3e-11 72.0 108 42.6
HanXRQChr09g0257311 Helianthus annuus HOM05D001112 ORTHO05D000996 4.3e-11 72.0 111 38.7
Gohir.D11G179400 Gossypium hirsutum HOM05D001112 ORTHO05D000996 5.7e-11 71.6 110 41.8
unitig_26.g9979 Utricularia gibba HOM05D001112 ORTHO05D000996 5.7e-11 71.6 92 45.7
CiPaw.08G126200 Carya illinoinensis HOM05D001112 ORTHO05D000996 7.4e-11 71.2 114 39.5
Gohir.A02G173700 Gossypium hirsutum HOM05D001112 ORTHO05D000996 7.4e-11 71.2 89 48.3
Haze_03679 Corylus avellana HOM05D000356 ORTHO05D000265 9.7e-11 70.9 111 44.1
Haze_03711 Corylus avellana HOM05D001112 ORTHO05D000996 9.7e-11 70.9 103 39.8
Migut.N01955 Erythranthe guttata HOM05D001112 ORTHO05D000996 9.7e-11 70.9 92 42.4
Haze_09865 Corylus avellana HOM05D001112 ORTHO05D000996 1.3e-10 70.5 107 40.2
Duzib147G1546 Durio zibethinus HOM05D001112 ORTHO05D000996 1.3e-10 70.5 93 46.2
Migut.N01967 Erythranthe guttata HOM05D001112 ORTHO05D000996 1.3e-10 70.5 53 60.4
Migut.O00450 Erythranthe guttata HOM05D001112 ORTHO05D000996 1.3e-10 70.5 57 52.6
TAR628G1170 Trochodendron aralioides HOM05D001112 ORTHO05D000996 1.3e-10 70.5 106 42.5
Migut.N01953 Erythranthe guttata HOM05D001112 ORTHO05D000996 1.7e-10 70.1 61 52.5
Migut.O00500 Erythranthe guttata HOM05D001112 ORTHO05D000996 1.7e-10 70.1 61 55.7
Prupe.7G173900 Prunus persica HOM05D001112 ORTHO05D000996 1.7e-10 70.1 78 42.3
Migut.N01960 Erythranthe guttata HOM05D001112 ORTHO05D000996 2.2e-10 69.7 92 45.7
PGR102G2664 Punica granatum HOM05D001112 ORTHO05D000996 2.2e-10 69.7 91 46.2
arahy.Tifrunner.gnm1.ann1.T7UW22 Arachis hypogaea HOM05D001112 ORTHO05D000996 2.8e-10 69.3 98 40.8
arahy.Tifrunner.gnm1.ann1.VWF79Z Arachis hypogaea HOM05D001112 ORTHO05D000996 2.8e-10 69.3 98 40.8
Migut.O00907 Erythranthe guttata HOM05D001112 ORTHO05D000996 2.8e-10 69.3 55 58.2
Lalb_Chr09g0321481 Lupinus albus HOM05D001112 ORTHO05D000996 2.8e-10 69.3 111 39.6
Nn5g30825 Nelumbo nucifera HOM05D001112 ORTHO05D000996 3.7e-10 68.9 106 41.5
Rhsim10G0206700 Rhododendron simsii HOM05D001112 ORTHO05D000996 3.7e-10 68.9 87 43.7
DCAR_010135 Daucus carota HOM05D001112 ORTHO05D000996 4.8e-10 68.6 114 39.5
FAN26G1865 Fragaria x ananassa HOM05D001112 ORTHO05D000996 4.8e-10 68.6 75 50.7
Glyma.02G045100 Glycine max HOM05D001112 ORTHO05D000996 4.8e-10 68.6 106 36.8
Cfa007022 Carpinus fangiana HOM05D001112 ORTHO05D000996 6.3e-10 68.2 111 39.6
ECA232G0295 Erigeron canadensis HOM05D001112 ORTHO05D000996 6.3e-10 68.2 58 58.6
Nn6g31935 Nelumbo nucifera HOM05D001112 ORTHO05D000996 6.3e-10 68.2 50 62.0
Rhsim08G0030700 Rhododendron simsii HOM05D001112 ORTHO05D000996 6.3e-10 68.2 106 35.8
Migut.N01958 Erythranthe guttata HOM05D001112 ORTHO05D000996 8.2e-10 67.8 54 55.6
Migut.N01961 Erythranthe guttata HOM05D001112 ORTHO05D000996 8.2e-10 67.8 109 38.5
Migut.N01965 Erythranthe guttata HOM05D001112 ORTHO05D000996 8.2e-10 67.8 92 43.5
QL06p051563 Quercus lobata HOM05D001112 ORTHO05D000996 8.2e-10 67.8 97 41.2
QL06p051780 Quercus lobata HOM05D001112 ORTHO05D000996 8.2e-10 67.8 97 41.2
RcHm_v2.0_Chr2g0098551 Rosa chinensis HOM05D001112 ORTHO05D000996 1.1e-09 67.4 69 50.7
Migut.N01973 Erythranthe guttata HOM05D001112 ORTHO05D000996 1.4e-09 67.0 109 36.7
Migut.O00577 Erythranthe guttata HOM05D001112 ORTHO05D000996 1.4e-09 67.0 55 58.2
RcHm_v2.0_Chr2g0098531 Rosa chinensis HOM05D001112 ORTHO05D000996 1.4e-09 67.0 68 51.5
SalBow3G0593 Salvia bowleyana HOM05D001112 ORTHO05D000996 1.4e-09 67.0 105 37.1
Sc07g0001180 Simmondsia chinensis HOM05D001112 ORTHO05D000996 1.4e-09 67.0 113 38.1
VMungo0251G3710 Vigna mungo HOM05D001112 ORTHO05D000996 1.4e-09 67.0 113 40.7
FAN28G2259 Fragaria x ananassa HOM05D001112 ORTHO05D000996 1.8e-09 66.6 60 53.3
MD02G1124400 Malus domestica HOM05D001112 ORTHO05D000996 1.8e-09 66.6 57 57.9
TAR376G0655 Trochodendron aralioides HOM05D001112 ORTHO05D000996 1.8e-09 66.6 115 37.4
CiPaw.07G062400 Carya illinoinensis HOM05D001112 ORTHO05D000996 2.4e-09 66.2 113 38.1
Migut.N01962 Erythranthe guttata HOM05D001112 ORTHO05D000996 2.4e-09 66.2 94 42.6
Migut.N01969 Erythranthe guttata HOM05D001112 ORTHO05D000996 2.4e-09 66.2 92 41.3
FAN19G1113 Fragaria x ananassa HOM05D001112 ORTHO05D000996 2.4e-09 66.2 75 46.7
vmacro11441 Vaccinium macrocarpon HOM05D001112 ORTHO05D000996 2.4e-09 66.2 59 50.8
Migut.N01956 Erythranthe guttata HOM05D001112 ORTHO05D000996 3.1e-09 65.9 56 53.6
Migut.O00558 Erythranthe guttata HOM05D001112 ORTHO05D000996 3.1e-09 65.9 56 53.6
Migut.O00668 Erythranthe guttata HOM05D001112 ORTHO05D000996 3.1e-09 65.9 109 40.4
CANSAT01G2075 Cannabis sativa HOM05D001112 ORTHO05D000996 4.1e-09 65.5 87 43.7
Cc07_g11230 Coffea canephora HOM05D001112 ORTHO05D000996 4.1e-09 65.5 110 40.0
Cc08_g01930 Coffea canephora HOM05D001112 ORTHO05D000996 4.1e-09 65.5 110 40.0
FvH4_1g11190 Fragaria vesca HOM05D001112 ORTHO05D000996 4.1e-09 65.5 71 50.7
PSO151G0173 Papaver somniferum HOM05D001112 ORTHO05D000996 4.1e-09 65.5 94 40.4
MSTRG.28005 Avicennia marina HOM05D001112 ORTHO05D000996 5.3e-09 65.1 56 50.0
Nitab4.5_0001789g0040 Nicotiana tabacum HOM05D001112 ORTHO05D000996 6.9e-09 64.7 40 70.0
MD15G1238500 Malus domestica HOM05D001112 ORTHO05D000996 9.1e-09 64.3 57 54.4
Phvul.003G266500 Phaseolus vulgaris HOM05D001112 ORTHO05D000996 9.1e-09 64.3 113 40.7
Psat4g102360 Pisum sativum HOM05D001112 ORTHO05D000996 9.1e-09 64.3 119 37.8
RcHm_v2.0_Chr2g0098521 Rosa chinensis HOM05D001112 ORTHO05D000996 9.1e-09 64.3 74 50.0
AUR62018008 Chenopodium quinoa HOM05D001112 ORTHO05D000996 1.2e-08 63.9 112 37.5
Lalb_Chr16g0391501 Lupinus albus HOM05D001112 ORTHO05D000996 1.5e-08 63.5 103 38.8
MD02G1124500 Malus domestica HOM05D001112 ORTHO05D000996 1.5e-08 63.5 57 56.1
RcHm_v2.0_Chr2g0098601 Rosa chinensis HOM05D001112 ORTHO05D000996 1.5e-08 63.5 73 49.3
Sabra05G0089100 Salix brachista HOM05D001112 ORTHO05D000996 1.5e-08 63.5 97 39.2
TPR.G19482 Trifolium pratense HOM05D001112 ORTHO05D000996 2.6e-08 62.8 112 36.6
BcaB03g16549 Brassica carinata HOM05D001112 ORTHO05D000996 3.4e-08 62.4 111 33.3
ClCG01G020550 Citrullus lanatus HOM05D001112 ORTHO05D000996 3.4e-08 62.4 108 41.7
Potri.005G108700 Populus trichocarpa HOM05D001112 ORTHO05D000996 3.4e-08 62.4 69 46.4
Lj2g0016442 Lotus japonicus HOM05D001112 ORTHO05D000996 5.9e-08 61.6 108 37.0
PSO339G1150 Papaver somniferum HOM05D001112 ORTHO05D000996 5.9e-08 61.6 106 37.7
Glyma.01G163000 Glycine max HOM05D001112 ORTHO05D000996 7.7e-08 61.2 73 46.6
Phvul.002G105200 Phaseolus vulgaris HOM05D001112 ORTHO05D000996 7.7e-08 61.2 62 46.8
Ah.02g123350 Amaranthus hybridus HOM05D001112 ORTHO05D000996 1.0e-07 60.8 108 38.0
Medtr5g022880 Medicago truncatula HOM05D001112 ORTHO05D000996 1.0e-07 60.8 71 46.5
Glyma.11G080400 Glycine max HOM05D001112 ORTHO05D000996 1.3e-07 60.5 79 40.5
Psat2g152320 Pisum sativum HOM05D001112 ORTHO05D000996 1.3e-07 60.5 66 40.9
Aqoxy6G02078 Aquilegia oxysepala HOM05D001112 ORTHO05D000996 1.7e-07 60.1 91 40.7
Ca_24938_v3 Cicer arietinum L. HOM05D001112 ORTHO05D000996 1.7e-07 60.1 59 49.2
PSO339G0374 Papaver somniferum HOM05D001112 ORTHO05D000996 1.7e-07 60.1 67 43.3
CiPaw.07G062300 Carya illinoinensis HOM05D001112 ORTHO05D000996 2.2e-07 59.7 86 40.7
ClCG10G000500 Citrullus lanatus HOM05D001112 ORTHO05D000996 2.2e-07 59.7 109 33.9
Lj4g0022808 Lotus japonicus HOM05D001112 ORTHO05D000996 2.2e-07 59.7 105 41.0
arahy.Tifrunner.gnm1.ann1.D9U3VU Arachis hypogaea HOM05D001112 ORTHO05D000996 3.8e-07 58.9 111 38.7
SHI08508 Sapria himalayana HOM05D001112 ORTHO05D000996 5.0e-07 58.5 91 41.8
MELO3C007937.2 Cucumis melo HOM05D001112 ORTHO05D000996 6.5e-07 58.2 106 36.8
TPR.G25141 Trifolium pratense HOM05D001112 ORTHO05D000996 6.5e-07 58.2 65 44.6
Glyma.16G122700 Glycine max HOM05D001112 ORTHO05D000996 8.5e-07 57.8 85 37.6
Medtr8g075090 Medicago truncatula HOM05D001112 ORTHO05D000996 8.5e-07 57.8 97 38.1
VMungo1215G3039 Vigna mungo HOM05D001112 ORTHO05D000996 8.5e-07 57.8 54 51.9
arahy.Tifrunner.gnm1.ann1.VYR2NH Arachis hypogaea HOM05D001112 ORTHO05D000996 1.1e-06 57.4 110 35.5
vmacro18437 Vaccinium macrocarpon HOM05D001112 ORTHO05D000996 1.1e-06 57.4 109 36.7
C07p05510 Brassica napus HOM05D001112 ORTHO05D000996 1.4e-06 57.0 67 38.8
BolC7t40951H Brassica oleracea HOM05D001112 ORTHO05D000996 1.4e-06 57.0 67 38.8
A07p03220 Brassica napus HOM05D001112 ORTHO05D000996 1.9e-06 56.6 67 40.3
BraA07t28120Z Brassica rapa HOM05D001112 ORTHO05D000996 1.9e-06 56.6 67 40.3
Sed0021148 Sechium edule HOM05D001112 ORTHO05D000996 1.9e-06 56.6 87 41.4
Ah.03g143220 Amaranthus hybridus HOM05D001112 ORTHO05D000996 2.5e-06 56.2 112 36.6
CsaV3_6G047450 Cucumis sativus L. HOM05D001112 ORTHO05D000996 2.5e-06 56.2 107 35.5
PSO541G2236 Papaver somniferum HOM05D001112 ORTHO05D000996 2.5e-06 56.2 89 36.0
PSO675G6287 Papaver somniferum HOM05D001112 ORTHO05D000996 2.5e-06 56.2 89 36.0
BcaC06g36312 Brassica carinata HOM05D001112 ORTHO05D000996 3.2e-06 55.8 70 38.6
Ca_03635_v3 Cicer arietinum L. HOM05D000039 ORTHO05D000996 3.2e-06 55.8 93 38.7
PSO339G0794 Papaver somniferum HOM05D001112 ORTHO05D000996 4.2e-06 55.5 71 38.0
Sed0024350 Sechium edule HOM05D001112 ORTHO05D000996 4.2e-06 55.5 103 35.9
AL5G31760 Arabidopsis lyrata HOM05D001112 ORTHO05D000996 5.5e-06 55.1 92 39.1
MELO3C013746.2 Cucumis melo HOM05D001112 ORTHO05D000996 7.2e-06 54.7 106 31.1
CsaV3_3G000570 Cucumis sativus L. HOM05D001112 ORTHO05D000996 7.2e-06 54.7 92 34.8
AT3G51330 Arabidopsis thaliana HOM05D001112 ORTHO05D000996 9.4e-06 54.3 92 38.0
THA.LOC104821344 Tarenaya hassleriana HOM05D001112 ORTHO05D000996 9.4e-06 54.3 106 34.0


User provided reference genes

Program Settings