Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 3.5e-51 204.9 123 100.0
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.9e-36 156.0 146 67.1
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 6.9e-31 137.5 78 85.9
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 2.0e-30 136.0 78 85.9
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 4.2e-28 128.3 79 79.7
Solyc03g033280.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 1.6e-27 126.3 78 80.8
Nitab4.5_0004770g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.6e-24 116.3 128 67.2
Nitab4.5_0000299g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 6.3e-24 114.4 127 66.1
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 2.2e-21 105.9 136 59.6
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 7.4e-17 90.9 78 60.3
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.0e-13 80.5 62 62.9
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.4e-12 76.6 82 56.1
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.4e-12 76.6 127 51.2
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 9.4e-12 73.9 82 48.8
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 9.4e-12 73.9 82 54.9
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 9.4e-12 73.9 82 54.9
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.6e-11 73.2 82 53.7
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 4.7e-11 71.6 51 56.9
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 7.9e-11 70.9 69 50.7
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 1.0e-10 70.5 73 56.2
Sopen06g019720 Solanum pennellii HOM05D003899 ORTHO05D003655 1.8e-10 69.7 79 48.1
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.3e-10 69.3 72 55.6
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 3.0e-10 68.9 86 48.8
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 5.1e-10 68.2 82 46.3
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 5.1e-10 68.2 82 46.3
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 5.1e-10 68.2 82 46.3
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 5.1e-10 68.2 80 53.8
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 8.8e-10 67.4 86 41.9
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.1e-09 67.0 80 47.5
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 1.5e-09 66.6 82 47.6
PGSC0003DMG400030778 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.5e-09 66.6 60 53.3
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 2.0e-09 66.2 89 46.1
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 2.6e-09 65.9 86 41.9
Peaxi162Scf00033g00086 Petunia axillaris HOM05D003899 ORTHO05D003655 4.4e-09 65.1 50 58.0
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 4.4e-09 65.1 89 44.9
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 5.7e-09 64.7 83 48.2
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 5.7e-09 64.7 132 43.9
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 1.7e-08 63.2 92 45.7
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 1.7e-08 63.2 92 44.6
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 2.2e-08 62.8 87 42.5
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 2.2e-08 62.8 72 50.0
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 2.8e-08 62.4 75 45.3
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 4.8e-08 61.6 84 45.2
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 4.8e-08 61.6 87 40.2
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 6.3e-08 61.2 90 42.2
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 8.2e-08 60.8 77 46.8
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.4e-07 60.1 51 54.9
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.4e-07 60.1 89 42.7
Solyc06g054660.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 1.4e-07 60.1 77 48.1
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 1.8e-07 59.7 82 43.9
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 1.8e-07 59.7 74 37.8
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 2.4e-07 59.3 84 47.6
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 3.1e-07 58.9 70 45.7
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 3.1e-07 58.9 70 45.7
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 3.1e-07 58.9 92 44.6
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 4.1e-07 58.5 79 43.0
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 4.1e-07 58.5 79 40.5
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 5.3e-07 58.2 90 42.2
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 7.0e-07 57.8 79 41.8
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 7.0e-07 57.8 133 43.6
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 7.0e-07 57.8 73 46.6
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 7.0e-07 57.8 74 37.8
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 9.1e-07 57.4 69 46.4
CAN.G833.1 Capsicum annuum HOM05D003899 ORTHO05D003655 9.1e-07 57.4 40 60.0
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 9.1e-07 57.4 70 41.4
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 1.2e-06 57.0 84 41.7
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 2.0e-06 56.2 67 41.8
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 2.6e-06 55.8 77 46.8
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.4e-06 55.5 51 51.0
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 5.9e-06 54.7 47 57.4
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 7.7e-06 54.3 74 36.5
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 7.7e-06 54.3 83 43.4
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 7.7e-06 54.3 79 40.5


User provided reference genes

Program Settings