Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 0.0e+00 1553.1 803 100.0
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 0.0e+00 1492.2 788 97.8
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 0.0e+00 1412.9 807 92.2
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 7.0e-249 864.4 806 63.8
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 6.8e-244 847.8 768 64.8
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 5.7e-235 818.1 808 61.9
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 5.9e-232 808.1 900 55.7
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 7.7e-232 807.7 899 55.4
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.2e-229 800.4 898 55.3
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.5e-222 776.2 897 54.0
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 7.3e-222 774.6 898 53.8
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 4.1e-217 758.8 876 53.7
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 8.4e-186 654.8 898 48.7
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 4.8e-181 639.0 903 46.5
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 4.5e-179 632.5 881 48.1
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 2.3e-175 620.2 898 46.1
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 2.1e-173 613.6 901 45.6
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 4.8e-173 612.5 898 45.5
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 2.3e-167 593.6 872 45.4
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 1.1e-164 584.7 845 47.0
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 2.6e-163 580.1 885 43.3
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.3e-162 577.8 881 44.4
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 8.5e-162 575.1 882 43.3
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 9.3e-161 571.6 884 43.3
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 1.8e-159 567.4 880 43.4
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 1.8e-159 567.4 880 44.8
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 1.5e-158 564.3 866 44.7
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 1.3e-157 561.2 835 45.7
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 2.8e-157 560.1 887 44.0
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 1.8e-156 557.4 861 43.8
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 9.1e-156 555.1 904 41.8
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 2.6e-155 553.5 878 43.7
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 2.6e-155 553.5 884 43.6
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 4.5e-155 552.7 898 41.6
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 5.9e-155 552.4 809 44.9
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 1.4e-153 547.7 877 43.0
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.0e-151 541.6 866 42.4
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.5e-150 537.7 867 42.8
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.5e-150 537.7 880 42.7
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 4.4e-150 536.2 866 42.1
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 7.4e-150 535.4 880 42.7
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 2.4e-148 530.4 877 43.0
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 5.3e-148 529.3 871 41.8
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 1.2e-147 528.1 903 41.2
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.0e-146 525.0 862 43.0
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 6.5e-146 522.3 877 42.3
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.4e-145 521.2 877 42.2
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.6e-144 517.7 900 40.9
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 2.1e-144 517.3 876 41.3
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 2.1e-144 517.3 908 41.0
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.7e-144 516.9 900 40.6
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 3.6e-144 516.5 900 40.7
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 1.8e-143 514.2 878 41.2
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 3.9e-143 513.1 900 41.3
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 4.4e-142 509.6 893 41.1
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 4.8e-141 506.1 880 40.6
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 1.1e-140 505.0 881 42.5
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.6e-139 501.1 879 40.3
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 4.5e-139 499.6 849 42.3
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 5.9e-139 499.2 880 40.8
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 5.9e-139 499.2 880 40.8
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 7.7e-139 498.8 878 41.5
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 1.3e-138 498.0 876 40.1
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 6.5e-138 495.7 881 40.2
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 5.5e-137 492.7 850 40.6
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 7.2e-137 492.3 835 42.5
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 2.7e-136 490.3 900 39.8
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 5.2e-135 486.1 891 40.0
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 2.0e-134 484.2 877 39.7
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 3.3e-134 483.4 838 41.6
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 2.2e-133 480.7 882 40.1
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 2.4e-132 477.2 761 44.0
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 2.0e-131 474.2 847 40.5
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 7.7e-131 472.2 850 39.6
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 1.0e-130 471.9 881 39.4
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 2.5e-129 467.2 850 40.6
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 5.5e-129 466.1 880 39.5
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 8.8e-127 458.8 861 40.7
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 2.8e-125 453.8 859 41.2
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 2.0e-123 447.6 878 38.0
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.0e-122 445.3 950 36.9
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 2.3e-122 444.1 849 38.2
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 5.0e-122 443.0 586 48.1
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 1.5e-121 441.4 873 37.2
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 7.2e-121 439.1 884 37.8
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 2.1e-120 437.6 848 37.1
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 2.8e-120 437.2 814 40.2
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 6.8e-119 432.6 956 36.3
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 2.6e-118 430.6 846 38.5
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.3e-117 428.3 854 39.2
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.6e-115 421.4 947 35.0
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 5.9e-115 419.5 854 37.8
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.0e-114 418.7 947 35.2
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 3.3e-113 413.7 823 39.0
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 3.3e-113 413.7 840 37.9
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 2.1e-112 411.0 938 34.9
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 2.0e-110 404.4 940 35.0
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 4.9e-109 399.8 968 33.2
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 1.0e-106 392.1 834 36.8
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 9.5e-105 385.6 837 37.8
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 6.2e-104 382.9 792 37.9
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 1.4e-103 381.7 835 37.5
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 5.2e-103 379.8 839 38.0
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 1.2e-99 368.6 840 37.0
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 2.7e-99 367.5 837 37.3
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 2.7e-99 367.5 837 37.3
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 6.0e-99 366.3 835 37.1
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 7.8e-99 365.9 839 37.4
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 3.0e-98 364.0 800 37.6
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 5.0e-98 363.2 837 36.8
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.5e-97 361.7 844 35.1
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 4.3e-97 360.1 836 36.8
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 4.3e-97 360.1 836 36.8
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 7.3e-97 359.4 825 35.2
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 3.1e-95 354.0 841 36.6
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 1.1e-89 335.5 650 40.5
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 3.6e-88 330.5 819 35.0
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 2.7e-83 314.3 918 33.1
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 5.1e-82 310.1 829 32.0
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 5.1e-82 310.1 895 33.0
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.6e-75 288.5 831 32.9
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 4.3e-73 280.4 773 32.2
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.9e-65 255.0 625 36.8
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 2.5e-65 254.6 610 34.4
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 4.8e-64 250.4 459 38.1
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.2e-62 245.7 668 34.4
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 4.5e-62 243.8 891 30.1
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 3.8e-61 240.7 907 28.9
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 1.1e-60 239.2 909 29.2
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 3.0e-58 231.1 465 39.4
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 4.3e-41 174.1 232 48.7
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 8.2e-32 143.3 182 46.2
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 6.5e-29 133.7 214 40.7
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 9.4e-28 129.8 787 26.7
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 8.0e-27 126.7 228 38.6
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 6.7e-26 123.6 373 30.8
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 5.3e-23 114.0 209 41.1
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 1.6e-22 112.5 496 28.2
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 1.6e-19 102.4 285 33.7
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.8e-18 99.0 315 29.2
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 4.8e-16 90.9 522 27.6
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 1.1e-15 89.7 149 45.0
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 1.2e-14 86.3 140 42.1
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 1.3e-13 82.8 142 43.7
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 4.2e-12 77.8 140 39.3
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 2.2e-08 65.5 96 49.0
Dinv31022 Davidia involucrata HOM05D033086 ORTHO05D005796 7.0e-07 60.5 95 41.1
Dinv31080 Davidia involucrata HOM05D033086 ORTHO05D005796 7.0e-07 60.5 95 41.1
CiPaw.09G187300 Carya illinoinensis HOM05D002036 ORTHO05D001913 9.1e-07 60.1 238 26.5
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 1.6e-06 59.3 284 25.0
Nitab4.5_0002330g0010 Nicotiana tabacum HOM05D002769 ORTHO05D003160 3.5e-06 58.2 130 34.6
Manes.12G040100 Manihot esculenta HOM05D002769 ORTHO05D003160 5.9e-06 57.4 245 26.5
Gorai.009G099300 Gossypium raimondii HOM05D002515 ORTHO05D002722 7.7e-06 57.0 179 30.2


User provided reference genes

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