Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.9e-248 862.1 440 100.0
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 5.0e-225 784.3 406 98.3
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 3.5e-218 761.5 406 95.3
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 6.0e-202 707.6 403 89.1
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 6.9e-190 667.5 406 82.3
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.0e-189 666.0 406 81.5
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.3e-188 663.3 412 82.3
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 9.4e-155 550.8 402 70.6
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 4.7e-146 521.9 415 65.5
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.3e-145 519.6 400 67.5
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 3.9e-145 518.8 395 69.9
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.0e-144 516.5 398 68.8
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 6.5e-140 501.5 394 67.0
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.1e-139 500.7 397 67.5
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 2.7e-138 496.1 392 66.1
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.7e-135 486.9 399 64.7
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.1e-134 484.2 407 63.4
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 5.0e-132 475.3 401 62.6
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 8.5e-132 474.6 401 62.6
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 3.2e-131 472.6 393 63.4
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 5.5e-131 471.9 402 62.7
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.5e-128 463.8 398 63.8
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 2.0e-128 463.4 409 61.4
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.3e-127 460.7 396 62.1
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 2.8e-127 459.5 394 62.2
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 6.3e-127 458.4 389 62.7
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.4e-126 456.4 401 61.3
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 4.1e-126 455.7 398 60.8
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 1.2e-125 454.1 412 59.2
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 4.5e-125 452.2 400 60.0
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 5.9e-125 451.8 389 60.9
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 7.7e-125 451.4 402 60.4
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.7e-124 450.3 378 65.9
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 2.2e-124 449.9 392 61.0
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.5e-123 447.2 393 60.1
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 3.2e-123 446.0 397 61.0
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 5.5e-123 445.3 395 60.5
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 7.2e-123 444.9 405 60.5
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.2e-122 444.1 408 60.3
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 6.1e-122 441.8 392 60.2
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 8.0e-122 441.4 414 59.9
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.0e-121 441.0 414 59.9
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 3.0e-121 439.5 396 58.1
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 3.0e-121 439.5 404 59.9
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 4.0e-121 439.1 398 58.8
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 2.0e-120 436.8 409 57.0
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.4e-120 436.0 413 59.1
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.4e-120 436.0 414 59.2
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 3.4e-120 436.0 402 59.2
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.7e-120 435.3 395 59.2
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 7.5e-120 434.9 393 60.3
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 9.8e-120 434.5 398 59.3
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 9.8e-120 434.5 407 59.2
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 9.8e-120 434.5 392 58.2
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 9.8e-120 434.5 418 57.2
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.8e-119 433.0 409 57.0
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 8.3e-119 431.4 414 58.9
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 8.3e-119 431.4 414 58.9
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.4e-118 430.6 399 58.6
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 1.8e-118 430.3 409 58.2
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 4.1e-118 429.1 463 53.1
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 3.5e-117 426.0 396 59.1
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 3.5e-117 426.0 393 58.3
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.0e-116 424.5 391 58.1
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.0e-116 424.5 398 57.0
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 1.7e-116 423.7 443 55.3
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 5.0e-116 422.2 394 58.1
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 5.0e-116 422.2 399 57.9
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 6.6e-116 421.8 394 58.1
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.5e-115 420.6 393 58.8
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.5e-115 420.6 396 57.1
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 2.5e-115 419.9 398 58.0
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 2.5e-115 419.9 394 56.9
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.5e-115 419.9 392 56.1
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 1.2e-114 417.5 395 58.5
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.4e-113 414.1 404 56.9
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.7e-112 408.7 428 54.4
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 5.7e-112 408.7 414 56.3
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 9.2e-110 401.4 391 57.8
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.6e-109 400.6 418 54.5
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.3e-108 397.5 393 57.0
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 8.6e-108 394.8 389 57.1
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.9e-107 393.7 388 54.6
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 3.3e-107 392.9 367 58.3
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 4.7e-106 389.0 382 56.8
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 8.0e-106 388.3 394 55.6
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.0e-105 387.9 421 51.8
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 4.0e-105 386.0 412 53.2
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.5e-104 384.0 411 52.3
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.3e-103 380.9 392 54.8
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.7e-103 379.4 295 66.1
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 6.4e-103 378.6 411 51.8
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.2e-101 374.4 390 53.3
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 1.3e-100 370.9 384 55.5
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 2.3e-100 370.2 381 54.9
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 3.0e-100 369.8 382 54.7
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 3.0e-100 369.8 395 54.4
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 3.9e-100 369.4 418 50.0
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.1e-99 367.9 397 53.7
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 6.2e-98 362.1 402 52.0
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 5.8e-96 355.5 403 47.6
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 2.2e-95 353.6 391 52.2
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.3e-92 344.4 312 61.2
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 9.5e-91 338.2 469 45.8
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 4.4e-88 329.3 297 58.6
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.3e-84 317.8 268 61.2
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 3.9e-84 316.2 457 44.2
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.5e-83 314.3 242 67.4
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 2.8e-82 310.1 390 47.9
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.2e-80 304.7 349 51.3
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 4.9e-79 299.3 375 48.0
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 4.2e-78 296.2 401 49.1
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.2e-77 294.7 400 42.5
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 1.4e-73 281.2 416 42.1
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.2e-72 278.1 404 44.3
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 7.6e-72 275.4 408 44.6
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.6e-66 257.7 378 43.7
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 8.4e-63 245.4 215 61.4
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.1e-62 245.0 412 37.4
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 3.3e-59 233.4 437 34.6
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 4.0e-57 226.5 462 33.5
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.5e-53 213.4 267 44.6
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 6.0e-53 212.6 176 62.5
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.9e-51 207.6 190 55.8
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 3.3e-51 206.8 306 44.1
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 5.5e-46 189.5 189 57.1
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.0e-39 168.7 170 54.1
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.5e-35 154.1 177 49.2
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 2.5e-35 154.1 155 53.5
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 5.9e-32 142.9 113 62.8
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 1.0e-31 142.1 175 50.9
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 4.4e-27 126.7 275 33.1
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 7.4e-27 125.9 104 59.6
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 3.5e-24 117.1 182 45.6
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 2.0e-19 101.3 153 39.2
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 1.1e-17 95.5 89 55.1
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.4e-17 95.1 65 69.2
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.2e-15 87.8 108 47.2
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 1.1e-14 85.5 85 51.8
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.4e-12 78.6 53 71.7
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 6.8e-12 76.3 111 47.7
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 6.8e-12 76.3 111 47.7
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 7.5e-11 72.8 63 65.1
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 7.5e-11 72.8 63 65.1
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.3e-10 72.0 155 37.4


User provided reference genes

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