Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 2.4e-125 452.2 231 100.0
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.0e-123 446.8 231 98.7
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.3e-118 429.9 231 94.8
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 5.9e-84 314.7 229 72.5
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 1.9e-58 229.9 233 60.9
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.9e-58 229.9 231 58.0
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.5e-50 203.0 233 54.9
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 6.6e-43 178.3 234 52.1
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 5.3e-40 168.7 237 51.1
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 2.0e-39 166.8 229 50.2
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 9.3e-37 157.9 243 46.1
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 2.5e-34 149.8 228 44.7
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 2.1e-28 130.2 138 52.9
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 6.0e-28 128.6 240 41.7
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 2.3e-27 126.7 224 42.4
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 3.3e-26 122.9 232 42.2
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 9.6e-26 121.3 241 41.5
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.6e-25 120.6 242 40.5
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 2.1e-25 120.2 235 44.3
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.4e-24 116.7 243 39.5
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 3.4e-23 112.8 227 41.9
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 2.2e-22 110.2 224 42.4
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.9e-22 109.0 246 38.2
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 8.4e-22 108.2 223 36.3
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 1.9e-21 107.1 223 42.2
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.9e-21 107.1 213 44.1
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 7.1e-21 105.1 219 40.2
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 9.3e-21 104.8 240 37.1
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 2.1e-20 103.6 212 42.5
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 2.7e-20 103.2 217 39.6
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.7e-20 103.2 218 38.1
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 2.7e-20 103.2 232 37.1
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 7.9e-20 101.7 226 39.4
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.9e-20 101.7 218 38.1
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.3e-19 100.9 225 38.7
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 1.8e-19 100.5 199 40.7
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.8e-19 100.5 212 43.4
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 2.3e-19 100.1 210 41.0
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 2.3e-19 100.1 216 40.7
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.0e-19 99.8 218 37.2
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 3.0e-19 99.8 213 39.9
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.9e-19 99.4 240 37.1
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 8.7e-19 98.2 99 54.5
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 1.5e-18 97.4 249 36.9
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 1.5e-18 97.4 213 41.8
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.9e-18 97.1 210 40.0
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 2.5e-18 96.7 229 36.7
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.3e-18 96.3 213 40.8
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 4.3e-18 95.9 216 38.9
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 4.3e-18 95.9 238 37.8
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 5.6e-18 95.5 199 39.2
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 9.6e-18 94.7 217 38.2
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 9.6e-18 94.7 217 38.2
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.3e-17 94.4 207 38.6
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 1.3e-17 94.4 86 64.0
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.3e-17 94.4 221 38.9
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.6e-17 94.0 102 51.0
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 2.8e-17 93.2 239 36.8
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 2.8e-17 93.2 111 47.7
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 3.7e-17 92.8 216 37.5
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.1e-16 91.3 227 36.1
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-16 91.3 216 37.0
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.8e-16 90.5 212 36.3
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 4.0e-16 89.4 216 36.6
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 6.9e-16 88.6 229 36.2
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 6.9e-16 88.6 246 37.8
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 9.0e-16 88.2 213 39.0
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.5e-15 87.4 224 38.4
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 1.5e-15 87.4 237 36.3
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 1.5e-15 87.4 237 36.3
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 3.4e-15 86.3 223 39.0
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 5.8e-15 85.5 163 41.7
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 7.6e-15 85.1 241 35.3
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.0e-14 84.7 94 53.2
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 1.0e-14 84.7 231 36.8
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.3e-14 84.3 219 37.9
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.7e-14 84.0 227 34.4
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 2.2e-14 83.6 230 36.1
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.9e-14 83.2 207 37.2
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 3.8e-14 82.8 235 39.1
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 4.9e-14 82.4 226 35.8
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 4.9e-14 82.4 205 35.6
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 4.9e-14 82.4 206 37.9
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 6.5e-14 82.0 224 37.9
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 8.4e-14 81.6 236 36.0
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.1e-13 81.3 74 62.2
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.4e-13 80.9 246 34.1
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.4e-13 80.9 237 37.6
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 1.9e-13 80.5 85 51.8
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.9e-13 80.5 169 37.9
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 2.5e-13 80.1 179 35.8
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 2.5e-13 80.1 240 38.3
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.5e-13 80.1 218 39.0
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 3.2e-13 79.7 228 32.0
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 3.2e-13 79.7 101 50.5
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 4.2e-13 79.3 228 33.3
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 4.2e-13 79.3 169 36.1
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 4.2e-13 79.3 230 37.8
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 5.5e-13 79.0 238 35.7
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 7.1e-13 78.6 178 38.2
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 7.1e-13 78.6 221 36.2
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 7.1e-13 78.6 90 52.2
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 7.1e-13 78.6 73 57.5
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 1.2e-12 77.8 92 51.1
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 1.6e-12 77.4 133 37.6
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 2.1e-12 77.0 74 52.7
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 2.1e-12 77.0 74 52.7
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 2.1e-12 77.0 74 52.7
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 2.1e-12 77.0 151 37.1
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 3.5e-12 76.3 88 48.9
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 4.6e-12 75.9 81 51.9
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 4.6e-12 75.9 79 55.7
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 7.9e-12 75.1 203 33.5
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.0e-11 74.7 210 37.6
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 1.0e-11 74.7 79 54.4
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 1.0e-11 74.7 204 33.8
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.0e-11 74.7 199 34.7
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.3e-11 74.3 97 47.4
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.8e-11 73.9 228 33.3
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.8e-11 73.9 208 33.2
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 2.3e-11 73.6 93 46.2
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.3e-11 73.6 82 58.5
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 3.0e-11 73.2 82 57.3
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.0e-11 73.2 208 34.1
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 3.0e-11 73.2 208 34.1
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 3.9e-11 72.8 93 46.2
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.9e-11 72.8 97 46.4
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.1e-11 72.4 95 48.4
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 6.7e-11 72.0 69 52.2
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 6.7e-11 72.0 69 52.2
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.1e-10 71.2 224 32.1
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 1.1e-10 71.2 228 34.6
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.5e-10 70.9 223 35.0
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.5e-10 70.9 232 35.8
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 1.9e-10 70.5 57 63.2
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.9e-10 70.5 87 49.4
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 2.5e-10 70.1 221 32.1
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 5.7e-10 68.9 236 34.3
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 5.7e-10 68.9 73 53.4
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 7.4e-10 68.6 79 53.2
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 3.7e-09 66.2 227 30.8
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 3.7e-09 66.2 221 33.0
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 4.8e-09 65.9 57 59.6
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 4.8e-09 65.9 72 52.8
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 8.2e-09 65.1 61 55.7
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 1.1e-08 64.7 68 51.5
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 5.3e-08 62.4 76 44.7
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 6.9e-08 62.0 80 43.8
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.5e-07 60.8 65 50.8
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 2.6e-07 60.1 177 36.7
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 1.3e-06 57.8 173 37.0


User provided reference genes

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